Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | KAB01_RS08765 | Genome accession | NZ_CP017642 |
| Coordinates | 1822506..1822886 (+) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain KAB01 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1817506..1827886
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KAB01_RS08735 (KAB01_01764) | kdsB | 1818409..1819170 (+) | 762 | WP_000680697.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| KAB01_RS08740 (KAB01_01765) | - | 1819182..1820162 (+) | 981 | WP_001075411.1 | DNA polymerase III subunit delta' | - |
| KAB01_RS08745 (KAB01_01766) | - | 1820174..1820515 (+) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| KAB01_RS08750 (KAB01_01767) | - | 1820533..1821306 (+) | 774 | WP_000497298.1 | TatD family hydrolase | - |
| KAB01_RS08755 (KAB01_01768) | - | 1821344..1821952 (+) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| KAB01_RS08760 (KAB01_01769) | - | 1821962..1822516 (+) | 555 | WP_000841373.1 | type II secretion system protein | - |
| KAB01_RS08765 (KAB01_01770) | xcpV | 1822506..1822886 (+) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| KAB01_RS08770 (KAB01_01771) | xcpW | 1822886..1823587 (+) | 702 | WP_000594589.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| KAB01_RS08775 (KAB01_01772) | gspK | 1823587..1824546 (+) | 960 | WP_000301476.1 | type II secretion system minor pseudopilin GspK | - |
| KAB01_RS08780 (KAB01_01773) | - | 1824777..1825373 (+) | 597 | WP_000908452.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| KAB01_RS08785 (KAB01_01774) | ung | 1825424..1826137 (+) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| KAB01_RS08790 (KAB01_01775) | - | 1826134..1827258 (+) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| KAB01_RS08795 (KAB01_01776) | tadA | 1827265..1827768 (+) | 504 | WP_000033178.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=200911 KAB01_RS08765 WP_000836911.1 1822506..1822886(+) (xcpV) [Acinetobacter baumannii strain KAB01]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=200911 KAB01_RS08765 WP_000836911.1 1822506..1822886(+) (xcpV) [Acinetobacter baumannii strain KAB01]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |