Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   BJD94_RS15210 Genome accession   NZ_CP017635
Coordinates   3008310..3008828 (+) Length   172 a.a.
NCBI ID   WP_017421185.1    Uniprot ID   A0A087ID55
Organism   Vibrio vulnificus Env1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3003310..3013828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJD94_RS15200 (BJD94_13905) gshA 3006051..3007616 (+) 1566 WP_039561463.1 glutamate--cysteine ligase -
  BJD94_RS15205 (BJD94_13910) - 3007627..3008259 (+) 633 WP_038969645.1 hypothetical protein -
  BJD94_RS15210 (BJD94_13915) luxS 3008310..3008828 (+) 519 WP_017421185.1 S-ribosylhomocysteine lyase Regulator
  BJD94_RS15215 (BJD94_13920) - 3008887..3010164 (-) 1278 WP_038941428.1 HlyC/CorC family transporter -
  BJD94_RS15220 (BJD94_13925) - 3010251..3011045 (-) 795 WP_011079539.1 inner membrane protein YpjD -
  BJD94_RS15225 (BJD94_13930) ffh 3011259..3012635 (+) 1377 WP_038964348.1 signal recognition particle protein -
  BJD94_RS15230 (BJD94_13935) rpsP 3012931..3013179 (+) 249 WP_011079541.1 30S ribosomal protein S16 -
  BJD94_RS15235 (BJD94_13940) rimM 3013195..3013743 (+) 549 WP_038941427.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19024.86 Da        Isoelectric Point: 5.2451

>NTDB_id=200835 BJD94_RS15210 WP_017421185.1 3008310..3008828(+) (luxS) [Vibrio vulnificus Env1]
MPLLDSFTVDHTRMHAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRKHLNGASVEIIDISP
MGCRTGFYMSLIGEPTEQQVAAAWTASMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAQNILAVGISVNRNDELA
LPEAMLKELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=200835 BJD94_RS15210 WP_017421185.1 3008310..3008828(+) (luxS) [Vibrio vulnificus Env1]
ATGCCATTATTAGATAGTTTTACCGTTGACCACACTCGCATGCATGCACCCGCGGTGCGTGTGGCAAAAACCATGCAAAC
GCCAAAAGGCGACACCATTACCGTGTTTGACTTACGTTTCACTGCACCTAACAAAGATATTTTGTCAGAGAAAGGCATTC
ACACTTTAGAGCACTTGTACGCAGGCTTTATGCGTAAGCATCTCAATGGCGCCTCGGTTGAGATCATCGATATCTCACCG
ATGGGCTGTCGTACCGGTTTCTACATGAGTTTGATTGGCGAGCCGACCGAACAACAAGTGGCGGCTGCGTGGACGGCTTC
GATGGAAGATGTGTTGAAAGTGGAAAGCCAAAACAAGATCCCTGAGTTGAACGAGTATCAGTGCGGTACTGCAGCCATGC
ATTCGCTAGATGAAGCGAAGCAAATTGCTCAAAATATCTTAGCGGTTGGTATTTCAGTCAATAGAAACGATGAGCTAGCA
TTGCCAGAAGCAATGCTAAAAGAGCTCAAAGTCGATTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A087ID55

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.719

99.419

0.872

Multiple sequence alignment