Detailed information NTG0200832

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BJD94_RS15090
• Genome accession: NZ_CP017635
• Coordinates: 2985947..2986939 (+)
• Length: 330 a.a.
• NCBI ID: WP_017420278.1
• Uniprot ID: -
• Organism: Vibrio vulnificus Env1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2980947..2991939

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BJD94_RS15055 (BJD94_13760)	ftsB	2980978..2981259 (+)	282	WP_017420271.1	cell division protein FtsB	-
BJD94_RS15060 (BJD94_13765)	ispD	2981259..2981972 (+)	714	WP_072600760.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
BJD94_RS15065 (BJD94_13770)	ispF	2981969..2982445 (+)	477	WP_017420273.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
BJD94_RS15070 (BJD94_13775)	truD	2982481..2983524 (+)	1044	WP_072600762.1	tRNA pseudouridine(13) synthase TruD	-
BJD94_RS15075 (BJD94_13780)	surE	2983530..2984297 (+)	768	WP_017420275.1	5'/3'-nucleotidase SurE	-
BJD94_RS15080 (BJD94_13785)	-	2984300..2984926 (+)	627	WP_038941444.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
BJD94_RS15085 (BJD94_13790)	-	2984970..2985866 (+)	897	WP_038964354.1	peptidoglycan DD-metalloendopeptidase family protein	-
BJD94_RS15090 (BJD94_13795)	rpoS	2985947..2986939 (+)	993	WP_017420278.1	RNA polymerase sigma factor RpoS	Regulator
BJD94_RS15095 (BJD94_13800)	mutS	2987015..2989576 (-)	2562	WP_026050395.1	DNA mismatch repair protein MutS	-
BJD94_RS15100 (BJD94_13805)	pncC	2989660..2990163 (+)	504	WP_017420280.1	nicotinamide-nucleotide amidase	-
BJD94_RS15105 (BJD94_13810)	recA	2990296..2991345 (+)	1050	WP_038941440.1	recombinase RecA	Machinery gene
BJD94_RS15110 (BJD94_13815)	recX	2991455..2991916 (+)	462	WP_038964353.1	recombination regulator RecX	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 38011.07 Da
• Isoelectric Point: 4.4761

>NTDB_id=200832 BJD94_RS15090 WP_017420278.1 2985947..2986939(+) (rpoS) [Vibrio vulnificus Env1]
MSISNTVTKVKDLDVNQMDDDFNDDIEMNEKEDLTEEKVTLREEFDASNKSLDATQLYLGEIGFSPLLTAEEEVLYARRA
LRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTR
TIRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVDDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANN
SDPEVSTQDEDMRVSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGQEIGLTRERVRQIQVEGLRRLREVLIKQGLN
MENLFDIDMD

Nucleotide

• Length: 993 bp

>NTDB_id=200832 BJD94_RS15090 WP_017420278.1 2985947..2986939(+) (rpoS) [Vibrio vulnificus Env1]
ATGAGTATCAGCAACACAGTCACCAAAGTTAAAGATCTCGATGTTAATCAGATGGATGATGATTTTAACGACGATATCGA
GATGAATGAAAAAGAAGATCTTACCGAAGAAAAAGTCACACTTCGCGAGGAGTTTGACGCCAGCAACAAGAGCTTAGACG
CGACGCAGCTCTATCTAGGAGAAATTGGCTTTTCTCCACTATTAACCGCAGAAGAAGAAGTGCTTTATGCTCGACGTGCA
TTACGAGGCGATGAAGCCGCGCGTAAACGTATGATTGAAAGTAACTTACGTCTAGTGGTTAAGATTTCCCGCCGTTACAG
TAATCGCGGTCTTGCACTGCTTGATTTGATTGAAGAGGGTAACCTTGGTTTGATCCGTGCGGTAGAGAAATTCGATCCTG
AGCGTGGTTTCCGCTTCTCGACTTACGCAACATGGTGGATTCGCCAAACCATCGAACGTGCTTTAATGAATCAGACTCGA
ACCATCCGTTTACCTATCCATGTTGTTAAAGAGCTGAACATTTATCTACGTACGGCGCGTGAGCTTTCTCAAAAACTCGA
TCATGAGCCAACCGCTGAAGAGATCGCTGCGCAACTGGATATTCCGGTTGACGATGTGAGCAAAATGCTGCGTTTGAACG
AGCGCATTAGTTCTGTTGATACGCCGATTGGTGGAGATGGAGAGAAGGCGTTATTAGATATTATTCCTGATGCAAACAAC
TCTGACCCAGAGGTTTCAACGCAAGATGAAGACATGCGTGTTTCCTTGATTCATTGGTTGGAAGAGCTCAATCCGAAACA
AAAAGAAGTGTTGGCACGTCGCTTTGGTTTGTTGGGCTATGAGCCTTCAACACTGGAAGAGGTTGGACAAGAGATTGGTT
TAACTCGTGAGCGAGTGCGCCAGATTCAGGTTGAAGGGTTACGTCGCCTCCGTGAAGTTCTGATCAAACAAGGTCTGAAT
ATGGAAAACTTGTTTGATATCGATATGGATTGA

Domains

Predicted by InterproScan.

• Sigma-70 region 2 (Sigma70_r2) (91-160)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (53-86)

• Sigma-70 region 3 (Sigma70_r3) (171-244)

• Sigma-70, region 4 (Sigma70_r4) (259-312)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	81.602	100	0.833