Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   BJD94_RS07235 Genome accession   NZ_CP017635
Coordinates   1363870..1365270 (-) Length   466 a.a.
NCBI ID   WP_017428872.1    Uniprot ID   -
Organism   Vibrio vulnificus Env1     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1358870..1370270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJD94_RS07200 (BJD94_06080) moaE 1359462..1359917 (-) 456 WP_011080885.1 molybdopterin synthase catalytic subunit MoaE -
  BJD94_RS07205 (BJD94_06085) moaD 1359919..1360164 (-) 246 WP_011080886.1 molybdopterin synthase sulfur carrier subunit -
  BJD94_RS07210 (BJD94_06090) moaC 1360161..1360640 (-) 480 WP_017428877.1 cyclic pyranopterin monophosphate synthase MoaC -
  BJD94_RS07215 (BJD94_06095) moaB 1360651..1361163 (-) 513 WP_017428876.1 molybdenum cofactor biosynthesis protein B -
  BJD94_RS07220 (BJD94_06100) moaA 1361242..1362231 (-) 990 WP_017428875.1 GTP 3',8-cyclase MoaA -
  BJD94_RS07225 (BJD94_06105) - 1362546..1363436 (+) 891 WP_038969071.1 YvcK family protein -
  BJD94_RS07230 (BJD94_06110) luxU 1363523..1363870 (-) 348 WP_017428873.1 quorum-sensing phosphorelay protein LuxU -
  BJD94_RS07235 (BJD94_06115) luxO 1363870..1365270 (-) 1401 WP_017428872.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  BJD94_RS07240 (BJD94_06120) uvrB 1365578..1367608 (-) 2031 WP_013572115.1 excinuclease ABC subunit UvrB -
  BJD94_RS07245 (BJD94_06125) - 1367703..1367891 (-) 189 WP_017428870.1 hypothetical protein -
  BJD94_RS07255 (BJD94_06135) rsxA 1368489..1369067 (+) 579 WP_017428869.1 electron transport complex subunit RsxA -
  BJD94_RS07260 (BJD94_06140) rsxB 1369069..1369665 (+) 597 WP_011080896.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 52098.58 Da        Isoelectric Point: 6.2540

>NTDB_id=200807 BJD94_RS07235 WP_017428872.1 1363870..1365270(-) (luxO) [Vibrio vulnificus Env1]
MQQITTTKQRYLLMVEDTASVAALYRSYLMPLGIDINIVGTGRDAIDSLKHRIPDLILLDLRLPDMTGMDVLHAVKASHP
DVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKASKLKNDSDSAGSQNYQGFIGSSQKMQQVYRTI
DSAASSKASIFITGESGTGKEVCAEAIHAASRRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADGG
TLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRER
GEDVIEIAYSLLGYMSHEEGKNFVRFSQSVIDRFNEYEWPGNVRQLQNVLRNVVVLNNGKEITMEMLPPPLNQPFERKES
AQPDLSELISVRDICPLWLTEKLAIEQAIKACDGNIPRAAGYLDVSPSTIYRKLQAWNEKEEKQKA

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=200807 BJD94_RS07235 WP_017428872.1 1363870..1365270(-) (luxO) [Vibrio vulnificus Env1]
ATGCAACAAATAACGACAACGAAACAGCGTTACTTGCTGATGGTAGAAGACACCGCTTCTGTCGCAGCCCTCTATCGCTC
CTATCTCATGCCATTGGGTATCGATATCAATATCGTGGGTACTGGGCGTGACGCGATAGACAGTTTAAAACATCGCATTC
CAGATCTTATTCTGCTGGACTTACGCCTACCGGACATGACGGGAATGGACGTATTGCATGCAGTGAAAGCAAGCCACCCT
GATGTTCCTATCATTTTCATGACCGCACACGGCTCGATCGATACTGCTGTTGAAGCAATGCGACACGGCTCGCAAGATTT
CTTGATCAAACCCTGTGAAGCTGACCGACTCAGGGTCACGGTGAACAACGCTATCCGCAAGGCGAGCAAGCTAAAAAATG
ATTCAGACAGTGCAGGCAGCCAAAATTATCAAGGCTTTATCGGCAGTAGCCAAAAAATGCAGCAGGTTTATCGCACCATT
GACTCGGCGGCGAGCAGTAAAGCAAGCATCTTTATCACAGGTGAAAGTGGTACAGGTAAAGAGGTGTGCGCAGAAGCCAT
TCATGCGGCCAGTCGACGTGGAGACAAGCCATTTATCGCGATTAACTGTGCAGCGATCCCCAAGGATTTGATTGAAAGTG
AGCTATTTGGGCATGTCAAAGGTGCGTTTACCGGCGCAGCGACCGATCGCCAAGGGGCAGCAGAGCTCGCCGATGGAGGC
ACACTGTTCCTTGATGAGCTGTGTGAAATGGACCTAGATCTGCAAACAAAATTGCTGCGTTTTATCCAAACGGGTACTTT
CCAAAAAGTGGGCTCTTCAAAAATGAAGAGTGTTGACGTGCGTTTTGTGTGCGCGACAAACCGAGACCCTTGGAAAGAAG
TACAAGAAGGGCGCTTTCGTGAAGATTTGTACTACCGACTTTATGTGATTCCACTGCACTTGCCACCACTTCGTGAACGT
GGAGAGGATGTCATCGAGATCGCTTACTCGTTACTGGGTTACATGTCACATGAGGAAGGGAAAAACTTTGTTCGTTTCTC
TCAATCTGTGATAGATAGATTTAATGAATATGAGTGGCCAGGCAATGTGCGTCAGTTACAAAATGTGCTGCGTAACGTGG
TGGTTCTTAACAACGGTAAAGAGATTACCATGGAGATGTTGCCGCCTCCTTTGAATCAGCCCTTTGAACGCAAAGAAAGT
GCGCAACCTGATCTGAGTGAGTTGATTTCCGTCAGAGATATTTGTCCATTGTGGTTGACCGAGAAACTGGCGATTGAACA
AGCGATTAAAGCGTGTGATGGTAACATTCCGAGAGCCGCAGGCTATCTTGATGTCAGCCCGTCGACGATTTATCGCAAGT
TACAGGCGTGGAATGAAAAAGAAGAAAAACAGAAAGCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(417-457)

Response regulator receiver domain (Response_reg)

(13-121)

Sigma-54 interaction domain (Sigma54_activat)

(147-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.323

95.708

0.826

Multiple sequence alignment