Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   BJD94_RS05925 Genome accession   NZ_CP017635
Coordinates   1072240..1073661 (+) Length   473 a.a.
NCBI ID   WP_103155024.1    Uniprot ID   -
Organism   Vibrio vulnificus Env1     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1067240..1078661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJD94_RS05905 (BJD94_04795) - 1067744..1068511 (-) 768 WP_103155020.1 adenosylcobinamide-GDP ribazoletransferase -
  BJD94_RS05910 (BJD94_04800) cobT 1068513..1069541 (-) 1029 WP_103155021.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  BJD94_RS05915 (BJD94_04805) - 1069724..1070962 (-) 1239 WP_103155022.1 M12 family metallo-peptidase -
  BJD94_RS05920 (BJD94_04815) - 1071468..1072166 (+) 699 WP_103155023.1 oxidoreductase -
  BJD94_RS05925 (BJD94_04820) sbcB 1072240..1073661 (+) 1422 WP_103155024.1 exodeoxyribonuclease I Machinery gene
  BJD94_RS05930 (BJD94_04825) - 1073707..1074078 (+) 372 WP_045588948.1 CidA/LrgA family protein -
  BJD94_RS05935 (BJD94_04830) - 1074081..1074758 (+) 678 WP_039449453.1 LrgB family protein -
  BJD94_RS05940 (BJD94_04835) - 1075082..1075474 (+) 393 WP_017419943.1 SulA-like leucine-rich domain-containing protein -
  BJD94_RS05945 (BJD94_04840) - 1075677..1076780 (+) 1104 WP_038963117.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  BJD94_RS05950 (BJD94_04845) - 1076875..1077264 (-) 390 WP_017419941.1 hypothetical protein -
  BJD94_RS05955 (BJD94_04850) - 1077504..1078271 (-) 768 WP_017419940.1 phospholipase A -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54802.04 Da        Isoelectric Point: 5.1722

>NTDB_id=200803 BJD94_RS05925 WP_103155024.1 1072240..1073661(+) (sbcB) [Vibrio vulnificus Env1]
MQQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVIYCRPPADYLPAPEAALITGITPQKAQKEGLPEP
EFIAKIHAELSRPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYSWSWQNGNSRWDLLDVMRACHALRPEGVEWPENEEGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQY
TSWIVPLAWHPTNNNAVIVVDLAKDPQPLFDLDADALHERLYTRHDELGDLLPVPVKLVHLNKCPILAPAKTLTAENATN
IGIDREQCLANLALIRQHPEVREKLVQLFSIEREFEKSHDVDTLLYDGFFSPADKASMDILRQTDPTHLAALDITFNDKR
IEPLLFRYRARNYPWTLDENEQRRWTNHCREYFESRIEEYMLNLENLVHEHESDEKKMAILKSVYRYTESLIS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=200803 BJD94_RS05925 WP_103155024.1 1072240..1073661(+) (sbcB) [Vibrio vulnificus Env1]
ATGCAGCAAGACAATCAGCCCACTTTCTTCTTTTTTGACTATGAGACTTGGGGAACCAGCCCAGCAAAAGATCGTCCATC
GCAATTTGCTGGCGTTCGTACCGATGAAAACTTCAATATCATCGGCGAACCATTGGTGATTTATTGTCGCCCACCTGCCG
ATTATTTACCGGCCCCCGAAGCCGCGCTCATTACCGGAATTACGCCGCAAAAAGCGCAGAAAGAAGGCTTACCAGAGCCA
GAATTCATCGCTAAAATCCACGCAGAGTTGTCGCGCCCGAACACCACGAGCCTCGGCTACAACAGTATTCGCTTCGATGA
CGAAGTCACGCGTTACACCTGCTATCGCAATTTCCTCGATCCCTATTCATGGAGCTGGCAAAACGGCAATTCACGCTGGG
ATCTGCTTGATGTGATGCGAGCTTGTCACGCATTAAGACCGGAAGGGGTGGAATGGCCGGAAAATGAAGAAGGCTTTACC
AGCTTTAAACTGGAGCACCTTTCGGTAGCGAATGGCATTGAACACAGTAACGCGCATGATGCGATGGCCGATGTAATCGC
CACCATCGAAATGGCGAAAAAAGTCAAAGCCGCGCAACCCAAATTGTTTGATTACTTCTTTAGCATGCGCCATAAGCGTA
AGCTCAATGAGTTGATCGATATTGTTAACATGACCCCTTTGATGCATGTCTCTGGCATGTTAGGCCGTGAATGCCAATAC
ACCAGTTGGATTGTGCCATTAGCTTGGCACCCGACCAACAACAATGCGGTGATTGTGGTCGACTTAGCCAAAGATCCTCA
ACCCCTCTTCGATTTGGATGCCGATGCGCTACATGAGCGTCTTTACACACGTCATGATGAGCTGGGTGACTTACTGCCTG
TGCCAGTTAAATTGGTGCATTTGAATAAGTGCCCGATTTTAGCACCCGCCAAAACCCTCACAGCGGAGAACGCCACCAAT
ATTGGCATCGACCGAGAACAATGTTTGGCAAACTTAGCCCTTATTCGCCAGCACCCAGAAGTGCGAGAAAAGTTGGTGCA
GCTGTTCTCAATTGAACGCGAGTTTGAGAAAAGTCATGATGTCGATACCCTGTTGTACGACGGTTTCTTCTCGCCTGCCG
ACAAAGCCTCGATGGACATTCTCCGCCAAACCGATCCAACTCACCTTGCCGCTTTGGACATCACGTTCAACGATAAACGC
ATCGAACCGCTGCTGTTTCGCTACCGCGCGCGCAATTACCCATGGACGTTGGATGAGAACGAACAGCGCCGTTGGACGAA
TCATTGCCGCGAATACTTCGAAAGTCGAATTGAAGAGTACATGCTTAATTTGGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAAATGGCGATATTAAAATCCGTGTACCGCTATACTGAGAGCTTGATCTCATAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

80.297

99.789

0.801

Multiple sequence alignment