Detailed information NTG0020078

Bioinformatically predicted

Overview

• Name: clpE
• Type: Regulator
• Locus tag: SSU05_0390
• Genome accession: CP000407
• Coordinates: 373721..374473 (+)
• Length: 250 a.a.
• NCBI ID: ABP89357.1
• Uniprot ID: -
• Organism: Streptococcus suis 05ZYH33
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 368721..379473

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SSU05_0385	-	370938..371444 (+)	507	ABP89352.1	hypothetical protein	-
SSU05_0386	-	371422..371559 (+)	138	ABP89353.1	hypothetical protein	-
SSU05_0387	-	371556..371858 (+)	303	ABP89354.1	hypothetical protein	-
SSU05_0388	-	372162..372374 (+)	213	ABP89355.1	N-formylmethionyl-tRNA deformylase	-
SSU05_0389	-	372679..373740 (+)	1062	ABP89356.1	ATPases with chaperone activity, ATP-binding subunit	-
SSU05_0390	clpE	373721..374473 (+)	753	ABP89357.1	ATPases with chaperone activity, ATP-binding subunit	Regulator
SSU05_0391	-	374496..374780 (+)	285	ABP89358.1	ATPases with chaperone activity, ATP-binding subunit	-
SSU05_0392	-	374963..376057 (+)	1095	ABP89359.1	4-alpha-glucanotransferase	-
SSU05_0393	-	376039..376473 (+)	435	ABP89360.1	4-alpha-glucanotransferase	-
SSU05_0394	-	376457..378730 (+)	2274	ABP89361.1	Glucan phosphorylase	-

Sequence

Protein

• Length: 250 a.a.
• Molecular weight: 27573.11 Da
• Isoelectric Point: 6.5028

>NTDB_id=20078 SSU05_0390 ABP89357.1 373721..374473(+) (clpE) [Streptococcus suis 05ZYH33]
MTKALNEKVRIDKLQKQIDNHTEQQKVVATVNDVAQAVERMTGIPVSQMGASDIERLKELKNRLAANVIGQDDAVEAVSR
AIRRNRAGFDDGNRPIGSFLFVGPTGVGKTELAKQLALDLFGNKDAIIRLDMSEYSDRTAVSKLIGTTAGYIGYDDNSHT
LTERVRRNPYSIVLMDEIEKADPQVITLLLQVLDDGHLTDGQGNQVNFKNTIIIATSNAGFGYGMAEGEENSRHHGPHRT
ILPPRVYQSF

Nucleotide

• Length: 753 bp

>NTDB_id=20078 SSU05_0390 ABP89357.1 373721..374473(+) (clpE) [Streptococcus suis 05ZYH33]
ATGACAAAAGCCTTGAATGAAAAAGTCCGTATTGATAAGCTACAAAAACAGATTGATAATCATACGGAGCAACAGAAAGT
GGTGGCGACTGTTAATGATGTGGCTCAGGCGGTTGAGCGGATGACAGGAATTCCAGTCTCTCAAATGGGAGCTTCTGACA
TTGAACGACTCAAGGAATTGAAAAATCGTCTGGCAGCAAACGTTATCGGTCAAGACGATGCGGTGGAAGCTGTATCTCGT
GCCATTCGTCGGAATCGTGCAGGTTTTGATGATGGCAACCGTCCAATTGGTTCCTTCCTCTTTGTTGGTCCGACAGGTGT
GGGTAAGACAGAGTTGGCAAAACAGTTAGCACTAGACTTGTTTGGTAACAAGGATGCCATTATTCGTTTGGATATGTCTG
AATACAGCGATCGGACAGCCGTTTCCAAATTAATCGGTACCACAGCTGGCTACATTGGCTACGATGACAATTCCCATACT
CTTACCGAGCGCGTCCGCCGCAATCCGTACTCAATCGTTCTTATGGATGAGATTGAAAAAGCTGATCCACAAGTGATTAC
CCTTCTCTTGCAAGTGCTAGATGATGGGCATTTGACTGATGGACAGGGCAACCAAGTTAACTTTAAAAATACCATTATTA
TCGCGACTTCTAATGCAGGTTTTGGTTATGGAATGGCAGAAGGTGAAGAAAATTCAAGACATCATGGACCGCATCGCACC
ATTCTTCCGCCCAGAGTTTATCAATCGTTTTAA

Domains

Predicted by InterproScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (94-222)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpE	Streptococcus pneumoniae TIGR4	51.915	94	0.488
clpC	Lactococcus lactis subsp. cremoris KW2	55.399	85.2	0.472
clpE	Streptococcus pneumoniae R6	53.425	87.6	0.468
clpE	Streptococcus pneumoniae D39	53.425	87.6	0.468
clpE	Streptococcus pneumoniae Rx1	53.425	87.6	0.468
clpE	Streptococcus mutans UA159	57.286	79.6	0.456
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	51.675	83.6	0.432
clpC	Bacillus subtilis subsp. subtilis str. 168	51.185	84.4	0.432
clpC	Streptococcus thermophilus LMG 18311	56.085	75.6	0.424
clpC	Streptococcus thermophilus LMD-9	56.085	75.6	0.424
clpC	Streptococcus pneumoniae TIGR4	52.821	78	0.412
clpC	Streptococcus pneumoniae Rx1	52.821	78	0.412
clpC	Streptococcus pneumoniae D39	52.821	78	0.412
clpC	Streptococcus mutans UA159	53.968	75.6	0.408