Detailed information
Bioinformatically predicted
Overview
| Name | comFC/cflB | Type | Machinery gene |
| Locus tag | SDD27957_08505 | Genome accession | CM001076 |
| Coordinates | 1627441..1627821 (-) | Length | 126 a.a. |
| NCBI ID | EFY03306.1 | Uniprot ID | - |
| Organism | Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1622441..1632821
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SDD27957_08470 | - | 1622565..1623362 (+) | 798 | EFY03299.1 | transposase IS861 orfB | - |
| SDD27957_08475 | - | 1623685..1624440 (-) | 756 | EFY03300.1 | hypothetical protein | - |
| SDD27957_08480 | - | 1624451..1625146 (-) | 696 | EFY03301.1 | ABC-type multidrug transport system | - |
| SDD27957_08485 | - | 1625159..1625347 (-) | 189 | EFY03302.1 | hypothetical protein | - |
| SDD27957_08490 | - | 1625352..1625699 (-) | 348 | EFY03303.1 | hypothetical protein | - |
| SDD27957_08495 | - | 1626075..1626617 (+) | 543 | EFY03304.1 | transposase IS1239 | - |
| SDD27957_08500 | - | 1626813..1627361 (-) | 549 | EFY03305.1 | sigma 54 modulation protein / S30EA ribosomal protein | - |
| SDD27957_08505 | comFC/cflB | 1627441..1627821 (-) | 381 | EFY03306.1 | putative late competence protein | Machinery gene |
| SDD27957_08510 | comFA/cflA | 1628078..1629403 (-) | 1326 | EFY03307.1 | putative late competence protein required for DNA uptake | Machinery gene |
| SDD27957_08515 | - | 1629459..1630097 (+) | 639 | EFY03308.1 | hypothetical protein | - |
| SDD27957_08520 | - | 1630201..1631136 (+) | 936 | EFY03309.1 | Cysteine synthase | - |
| SDD27957_08525 | - | 1631287..1631646 (-) | 360 | EFY03310.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 14503.87 Da Isoelectric Point: 9.8734
>NTDB_id=20078 SDD27957_08505 EFY03306.1 1627441..1627821(-) (comFC/cflB) [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
MLRHVFAQELAQVIKKDYPDFTPVPVPISKERYEERHFNQVTAILEAGNINYCMLFKRMDTSRQSSKTKNERLLSKDAYR
LSTFSELPAKILIIDDIYTTGNTIIALKKLLMHVGNSDIKSLSIAR
MLRHVFAQELAQVIKKDYPDFTPVPVPISKERYEERHFNQVTAILEAGNINYCMLFKRMDTSRQSSKTKNERLLSKDAYR
LSTFSELPAKILIIDDIYTTGNTIIALKKLLMHVGNSDIKSLSIAR
Nucleotide
Download Length: 381 bp
>NTDB_id=20078 SDD27957_08505 EFY03306.1 1627441..1627821(-) (comFC/cflB) [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
TTGCTAAGACATGTCTTTGCTCAAGAATTAGCCCAAGTTATTAAAAAAGACTATCCAGATTTTACTCCTGTTCCAGTTCC
TATCAGTAAGGAGCGTTATGAAGAACGTCATTTCAATCAAGTGACTGCTATACTTGAAGCAGGGAATATTAACTATTGCA
TGCTTTTTAAAAGAATGGATACTAGCCGTCAGTCTTCTAAAACTAAAAATGAAAGATTATTATCCAAAGATGCCTATCGT
CTCTCCACCTTCTCTGAATTACCAGCAAAAATCCTCATTATTGATGATATTTACACTACCGGTAACACCATTATCGCTTT
GAAAAAACTATTAATGCATGTTGGAAATAGTGACATCAAAAGTTTGTCAATTGCACGTTAA
TTGCTAAGACATGTCTTTGCTCAAGAATTAGCCCAAGTTATTAAAAAAGACTATCCAGATTTTACTCCTGTTCCAGTTCC
TATCAGTAAGGAGCGTTATGAAGAACGTCATTTCAATCAAGTGACTGCTATACTTGAAGCAGGGAATATTAACTATTGCA
TGCTTTTTAAAAGAATGGATACTAGCCGTCAGTCTTCTAAAACTAAAAATGAAAGATTATTATCCAAAGATGCCTATCGT
CTCTCCACCTTCTCTGAATTACCAGCAAAAATCCTCATTATTGATGATATTTACACTACCGGTAACACCATTATCGCTTT
GAAAAAACTATTAATGCATGTTGGAAATAGTGACATCAAAAGTTTGTCAATTGCACGTTAA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC/cflB | Streptococcus mitis NCTC 12261 |
42.063 |
100 |
0.421 |
| comFC/cflB | Streptococcus pneumoniae TIGR4 |
41.27 |
100 |
0.413 |
| comFC/cflB | Streptococcus pneumoniae Rx1 |
41.27 |
100 |
0.413 |
| comFC/cflB | Streptococcus pneumoniae D39 |
41.27 |
100 |
0.413 |
| comFC/cflB | Streptococcus pneumoniae R6 |
41.27 |
100 |
0.413 |
| comFC/cflB | Streptococcus mitis SK321 |
41.27 |
100 |
0.413 |