Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   BJJ90_RS17975 Genome accession   NZ_CP017631
Coordinates   3297999..3298628 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain SLK172     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3292999..3303628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJJ90_RS17960 (BJJ90_16715) helD 3293241..3295295 (-) 2055 WP_000420536.1 DNA helicase IV -
  BJJ90_RS17965 (BJJ90_16720) yccF 3295418..3295864 (+) 447 WP_001261235.1 YccF domain-containing protein -
  BJJ90_RS17970 (BJJ90_16725) yccS 3295874..3298036 (+) 2163 WP_000875061.1 YccS family putative transporter -
  BJJ90_RS17975 (BJJ90_16730) sxy/tfoX 3297999..3298628 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  BJJ90_RS17980 (BJJ90_16735) sulA 3298847..3299356 (+) 510 WP_000288706.1 SOS-induced cell division inhibitor SulA -
  BJJ90_RS17990 (BJJ90_16745) ompA 3299713..3300765 (+) 1053 WP_032202393.1 porin OmpA -
  BJJ90_RS17995 (BJJ90_16750) matP 3300840..3301292 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  BJJ90_RS18000 (BJJ90_16755) ycbZ 3301478..3303238 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=200768 BJJ90_RS17975 WP_000839153.1 3297999..3298628(-) (sxy/tfoX) [Escherichia coli strain SLK172]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=200768 BJJ90_RS17975 WP_000839153.1 3297999..3298628(-) (sxy/tfoX) [Escherichia coli strain SLK172]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGATGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment