Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   SSU05_0232 Genome accession   CP000407
Coordinates   222052..222768 (+) Length   238 a.a.
NCBI ID   ABP89200.1    Uniprot ID   -
Organism   Streptococcus suis 05ZYH33     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 217052..227768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU05_0230 - 218121..219746 (-) 1626 ABP89198.1 Glycosidase -
  SSU05_0231 - 219827..221821 (-) 1995 ABP89199.1 Phosphotransferase system IIC component, glucose/maltose/N-acetylglucosamine-specific -
  SSU05_0232 treR 222052..222768 (+) 717 ABP89200.1 Transcriptional regulator Regulator
  SSU05_0233 - 222826..223137 (+) 312 ABP89201.1 hypothetical protein -
  SSU05_0234 - 223134..223682 (+) 549 ABP89202.1 Uncharacterized membrane protein, required for colicin V production -
  SSU05_0235 - 223833..226169 (+) 2337 ABP89203.1 Mismatch repair ATPase (MutS family) -
  SSU05_0236 - 226193..226846 (+) 654 ABP89204.1 acetyltransferase, GNAT family family -
  SSU05_0237 - 227053..227367 (+) 315 ABP89205.1 Thiol-disulfide isomerase and thioredoxin -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27331.26 Da        Isoelectric Point: 6.7422

>NTDB_id=20076 SSU05_0232 ABP89200.1 222052..222768(+) (treR) [Streptococcus suis 05ZYH33]
MMKKYQEIYNDLKEKIRTNVYPAESSLPTEQQLQEIYGVSRDTVRKALAILTEGGLIQKVQGRGSMVLKQEILNFPVSGL
TSYQELTNVLQLSTKTDVVSLDMITVNSSLSHLTGFEPYSKVWKVVRTRSIDGKVSVVDTDYLAVDVVPELTTAIAEKSI
YEYLENKLGLDIAYAQKEITVEPTNREERELMQSKDDYLVLIKSRVYLGDTQQFQYTESKHKIDKFRFVDFARRKHSL

Nucleotide


Download         Length: 717 bp        

>NTDB_id=20076 SSU05_0232 ABP89200.1 222052..222768(+) (treR) [Streptococcus suis 05ZYH33]
ATGATGAAAAAATACCAAGAAATTTATAATGACTTAAAAGAAAAAATACGGACAAATGTTTATCCGGCAGAAAGCTCCCT
ACCGACAGAACAGCAGCTTCAGGAAATCTATGGTGTTAGTCGTGATACGGTTCGTAAGGCGTTGGCGATTTTGACTGAGG
GAGGTTTGATTCAAAAAGTGCAAGGGCGTGGTTCAATGGTCCTTAAGCAAGAAATTCTCAATTTCCCAGTTTCAGGTTTA
ACTTCCTATCAGGAATTGACAAATGTTCTCCAGCTTTCTACCAAGACAGATGTTGTCAGCTTAGATATGATTACCGTTAA
TAGTAGCCTTTCGCACTTGACAGGCTTTGAGCCGTATAGCAAGGTGTGGAAAGTTGTCCGTACACGTTCGATTGACGGTA
AGGTCTCCGTTGTGGATACAGATTATCTTGCTGTCGATGTCGTGCCAGAGTTGACAACTGCTATTGCTGAAAAATCCATC
TACGAATACCTAGAAAATAAGTTAGGCCTTGATATTGCTTATGCACAAAAAGAGATTACGGTAGAGCCGACCAATCGAGA
AGAGCGTGAGCTAATGCAATCGAAGGATGATTATTTGGTCTTGATTAAATCTCGTGTCTATCTCGGTGATACCCAACAAT
TCCAATATACAGAAAGCAAGCATAAAATTGATAAATTCCGCTTTGTAGATTTTGCTCGTAGAAAGCATTCTTTATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(4-67)

UTRA domain (UTRA)

(92-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

52.137

98.319

0.513

Multiple sequence alignment