Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   CGZ70_RS03170 Genome accession   NZ_CP022439
Coordinates   597408..597791 (+) Length   127 a.a.
NCBI ID   WP_002852281.1    Uniprot ID   Q9PHN2
Organism   Campylobacter jejuni strain 11168H/lacY     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 592408..602791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGZ70_RS03150 (CGZ70_03150) - 592487..594421 (-) 1935 WP_010891871.1 ribonuclease R family protein -
  CGZ70_RS03155 (CGZ70_03155) ilvC 594540..595562 (+) 1023 WP_002858483.1 ketol-acid reductoisomerase -
  CGZ70_RS03160 (CGZ70_03160) - 595566..596648 (+) 1083 WP_002873647.1 divergent polysaccharide deacetylase family protein -
  CGZ70_RS03165 (CGZ70_03165) dprA 596638..597411 (+) 774 WP_002874287.1 DNA-processing protein DprA Machinery gene
  CGZ70_RS03170 (CGZ70_03170) dprB 597408..597791 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX Machinery gene
  CGZ70_RS03175 (CGZ70_03175) - 597820..598659 (+) 840 WP_010891872.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  CGZ70_RS03180 (CGZ70_03180) msrA 598835..599332 (-) 498 WP_002858555.1 peptide-methionine (S)-S-oxide reductase MsrA -
  CGZ70_RS03185 (CGZ70_03185) ppa 599373..599891 (-) 519 WP_002858521.1 inorganic diphosphatase -
  CGZ70_RS03190 (CGZ70_03190) adk 599901..600479 (-) 579 WP_002858481.1 adenylate kinase -
  CGZ70_RS03195 (CGZ70_03195) aspS 600476..602227 (-) 1752 WP_002871806.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14088.59 Da        Isoelectric Point: 9.5433

>NTDB_id=200758 CGZ70_RS03170 WP_002852281.1 597408..597791(+) (dprB) [Campylobacter jejuni strain 11168H/lacY]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=200758 CGZ70_RS03170 WP_002852281.1 597408..597791(+) (dprB) [Campylobacter jejuni strain 11168H/lacY]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACATGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PHN2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449