Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   CGZ53_RS08635 Genome accession   NZ_CP022435
Coordinates   1694115..1694567 (-) Length   150 a.a.
NCBI ID   WP_015911983.1    Uniprot ID   B9DVX8
Organism   Streptococcus uberis strain NZ01     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1689115..1699567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGZ53_RS08620 (CGZ53_08615) - 1689825..1690259 (+) 435 WP_052715015.1 hypothetical protein -
  CGZ53_RS08625 (CGZ53_08620) - 1690629..1692413 (-) 1785 WP_046391646.1 ABC transporter ATP-binding protein -
  CGZ53_RS08630 (CGZ53_08625) - 1692413..1694122 (-) 1710 WP_100912284.1 ABC transporter ATP-binding protein -
  CGZ53_RS08635 (CGZ53_08630) rcrR 1694115..1694567 (-) 453 WP_015911983.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  CGZ53_RS08640 (CGZ53_08635) - 1694756..1695772 (+) 1017 WP_046388848.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  CGZ53_RS08645 (CGZ53_08640) galU 1695802..1696716 (+) 915 WP_100912285.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  CGZ53_RS08650 (CGZ53_08645) - 1696745..1697419 (-) 675 WP_100912286.1 rhomboid family intramembrane serine protease -
  CGZ53_RS08655 (CGZ53_08650) - 1697416..1697943 (-) 528 WP_046388368.1 5-formyltetrahydrofolate cyclo-ligase -
  CGZ53_RS08660 (CGZ53_08655) - 1698061..1699419 (+) 1359 WP_100912287.1 MATE family efflux transporter -

Sequence

Protein


Download         Length: 150 a.a.        Molecular weight: 17652.36 Da        Isoelectric Point: 7.4317

>NTDB_id=200737 CGZ53_RS08635 WP_015911983.1 1694115..1694567(-) (rcrR) [Streptococcus uberis strain NZ01]
MSRIIADLRELTHQIEQISEEVARKYHIDHLAGPQGHVLIYLDKHQNQEIYVKDIENALCISKSVASNLVKRMEKNGFID
IIPSQTDKRYKQVVITDKGLEKLPLVKECRKDIENYFFKEITREEFLTVRKVIDQLKQNMLDYKKGEDHA

Nucleotide


Download         Length: 453 bp        

>NTDB_id=200737 CGZ53_RS08635 WP_015911983.1 1694115..1694567(-) (rcrR) [Streptococcus uberis strain NZ01]
ATGTCAAGGATTATTGCTGATTTAAGAGAGTTAACCCATCAGATAGAACAAATTAGTGAAGAGGTTGCTCGAAAGTATCA
TATCGACCATTTAGCTGGACCTCAAGGGCATGTCCTTATTTATTTGGATAAGCATCAAAATCAAGAAATATATGTTAAGG
ATATTGAAAATGCTCTTTGTATTTCAAAATCCGTAGCTAGTAATCTCGTTAAGCGAATGGAAAAAAATGGCTTCATTGAT
ATCATTCCTTCTCAAACAGATAAACGCTATAAACAAGTTGTGATTACGGACAAAGGCCTTGAAAAATTGCCACTGGTAAA
AGAGTGTCGAAAAGACATCGAGAATTATTTCTTTAAGGAAATCACTAGAGAGGAATTTCTTACTGTTCGTAAAGTTATCG
ATCAATTGAAACAAAATATGCTAGATTATAAAAAAGGAGAAGATCATGCTTAA

Domains

Predicted by InterProScan.

MarR family (MarR)

(34-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B9DVX8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

42.857

93.333

0.4

Multiple sequence alignment