Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   CGZ53_RS03980 Genome accession   NZ_CP022435
Coordinates   753919..755664 (+) Length   581 a.a.
NCBI ID   WP_041817577.1    Uniprot ID   -
Organism   Streptococcus uberis strain NZ01     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 748919..760664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGZ53_RS03960 (CGZ53_03960) dapB 749501..750268 (+) 768 WP_012658273.1 4-hydroxy-tetrahydrodipicolinate reductase -
  CGZ53_RS03965 (CGZ53_03965) - 750265..751476 (+) 1212 WP_046389270.1 CCA tRNA nucleotidyltransferase -
  CGZ53_RS03970 (CGZ53_03970) - 751469..753340 (+) 1872 WP_100911994.1 ABC-F family ATP-binding cassette domain-containing protein -
  CGZ53_RS03975 (CGZ53_03975) - 753346..753831 (+) 486 WP_012658276.1 GNAT family N-acetyltransferase -
  CGZ53_RS03980 (CGZ53_03980) rcrP 753919..755664 (+) 1746 WP_041817577.1 ABC transporter ATP-binding protein Regulator
  CGZ53_RS03985 (CGZ53_03985) rcrQ 755661..757430 (+) 1770 WP_037592266.1 ABC transporter ATP-binding protein Regulator
  CGZ53_RS03990 (CGZ53_03990) gdhA 757553..758905 (+) 1353 WP_012658279.1 NADP-specific glutamate dehydrogenase -
  CGZ53_RS03995 (CGZ53_03995) - 758985..759395 (+) 411 WP_037592265.1 peptide deformylase -

Sequence

Protein


Download         Length: 581 a.a.        Molecular weight: 65259.81 Da        Isoelectric Point: 6.1594

>NTDB_id=200689 CGZ53_RS03980 WP_041817577.1 753919..755664(+) (rcrP) [Streptococcus uberis strain NZ01]
MSLLWTYLKKRHHLLFLNGLGAILFVIVNLGLPTILARMIDEGLVLNNEKSLYFWAFIMVIVVLLGVVGRIILSYASSRL
TTGMIKELRNDMFHKLQDYSHTEYEKIGVSSLVTRITNDAFILMQFAEMALRLGVITPLMMIFSVIMILLTSPSLAWIVA
VSMPFLVIVVLYVAIKTKPLSEKQQKTLDDLNQLVRENLTGLRVIRAFAREDFQEERFSEKNSAYAQTSKKLFVLTGLTE
PLFVQIIIAMIVAIVWFALEPLSLGVFKLGDLVAFIEYSFHAMFAFLIFANLFNMYPRMTVSSQRIQEVLDMPVSISKNE
DGVKESQTHGYLEFENVTFSYPGETESPVISNISFSAKPGETIAFIGSTGSGKSSLVNLIPRFYDVTFGRILVDGIDVRD
YELKALRSKIGFIPQKALLFTGTIEENIKYGKEQATDQEIHKASEISQAREFIESKKEGFQTHLAEGGSNLSGGQKQRLS
IARALVKNPDIYIFDDSFSALDYKTDAEVRKRLKEVTGDATVIIVAQRVGTIMDADQIIVLDQGQIVGKGTHEELLKTND
IYHEIANSQLNHGQKESEVAE

Nucleotide


Download         Length: 1746 bp        

>NTDB_id=200689 CGZ53_RS03980 WP_041817577.1 753919..755664(+) (rcrP) [Streptococcus uberis strain NZ01]
ATGTCTTTATTATGGACTTATTTAAAAAAACGTCATCATTTACTTTTTTTGAATGGCCTAGGTGCCATCCTTTTTGTCAT
TGTTAATTTAGGTTTGCCAACGATTTTGGCTAGGATGATTGATGAAGGTCTTGTCTTAAATAATGAGAAATCGTTATATT
TTTGGGCATTTATTATGGTAATTGTCGTCCTCCTTGGTGTTGTTGGAAGAATTATTTTATCATACGCTTCTAGTCGTTTA
ACAACGGGCATGATTAAAGAACTTAGAAATGACATGTTTCATAAGCTTCAAGATTATTCTCATACGGAATATGAAAAAAT
TGGTGTTTCTTCCTTGGTAACACGTATTACCAATGACGCTTTTATTCTAATGCAGTTTGCTGAGATGGCACTCCGATTGG
GGGTAATTACTCCTTTAATGATGATTTTTTCAGTCATCATGATTTTATTAACAAGCCCTTCTTTAGCTTGGATTGTTGCA
GTTTCAATGCCCTTTTTGGTCATTGTTGTTCTCTATGTTGCTATTAAAACCAAGCCATTATCAGAAAAACAACAAAAAAC
ATTAGATGATCTGAATCAGTTGGTCAGAGAAAATTTAACTGGTCTGAGAGTCATCCGAGCATTTGCAAGAGAAGACTTTC
AAGAAGAACGATTCTCAGAAAAAAATTCAGCTTACGCTCAAACATCAAAAAAGCTATTTGTCCTAACTGGATTAACGGAA
CCCTTATTTGTGCAAATTATTATTGCTATGATTGTGGCTATTGTTTGGTTTGCATTAGAACCGCTTTCTTTAGGAGTATT
TAAGCTAGGTGATTTAGTTGCTTTTATTGAATATAGCTTTCATGCCATGTTTGCCTTTTTGATTTTTGCAAATCTTTTTA
ATATGTACCCAAGAATGACAGTTTCTAGTCAGAGAATTCAAGAGGTATTAGACATGCCTGTCTCCATATCGAAAAATGAA
GATGGTGTCAAAGAAAGTCAAACCCATGGTTATTTAGAGTTTGAAAATGTCACCTTTTCCTATCCTGGTGAGACAGAGTC
TCCTGTCATCTCCAATATTTCATTTTCAGCTAAGCCTGGAGAAACTATTGCCTTTATTGGTTCAACTGGATCAGGTAAAT
CGTCTCTTGTAAACCTTATTCCGCGTTTTTATGATGTGACCTTTGGCCGCATTTTGGTGGATGGAATAGATGTCAGAGAC
TATGAGCTCAAGGCTTTGCGGTCAAAAATTGGTTTTATCCCTCAAAAAGCATTATTGTTTACTGGTACCATAGAAGAGAA
CATCAAATATGGTAAAGAGCAAGCAACTGATCAAGAAATTCATAAAGCTAGTGAGATTTCCCAGGCTAGAGAATTTATTG
AAAGTAAAAAAGAAGGATTTCAAACCCATCTTGCTGAAGGAGGAAGTAATCTTTCAGGTGGTCAAAAGCAACGCTTATCC
ATTGCGCGTGCGTTGGTTAAAAATCCTGATATCTATATTTTTGATGATTCCTTTTCTGCTTTAGATTATAAAACAGATGC
TGAAGTTCGTAAACGCTTGAAAGAAGTCACCGGTGATGCGACGGTCATCATTGTCGCTCAACGTGTTGGAACTATTATGG
ATGCTGATCAGATTATTGTTTTAGATCAAGGTCAAATCGTTGGTAAAGGCACACACGAAGAACTTCTAAAAACAAATGAC
ATCTATCATGAAATAGCTAACTCCCAATTGAATCATGGTCAGAAAGAAAGTGAGGTAGCAGAATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-497)

ABC transporter transmembrane region (ABC_membrane)

(16-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

41.76

91.91

0.384

Multiple sequence alignment