Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   CGZ53_RS03985 Genome accession   NZ_CP022435
Coordinates   755661..757430 (+) Length   589 a.a.
NCBI ID   WP_037592266.1    Uniprot ID   -
Organism   Streptococcus uberis strain NZ01     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 750661..762430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGZ53_RS03970 (CGZ53_03970) - 751469..753340 (+) 1872 WP_100911994.1 ABC-F family ATP-binding cassette domain-containing protein -
  CGZ53_RS03975 (CGZ53_03975) - 753346..753831 (+) 486 WP_012658276.1 GNAT family N-acetyltransferase -
  CGZ53_RS03980 (CGZ53_03980) rcrP 753919..755664 (+) 1746 WP_041817577.1 ABC transporter ATP-binding protein Regulator
  CGZ53_RS03985 (CGZ53_03985) rcrQ 755661..757430 (+) 1770 WP_037592266.1 ABC transporter ATP-binding protein Regulator
  CGZ53_RS03990 (CGZ53_03990) gdhA 757553..758905 (+) 1353 WP_012658279.1 NADP-specific glutamate dehydrogenase -
  CGZ53_RS03995 (CGZ53_03995) - 758985..759395 (+) 411 WP_037592265.1 peptide deformylase -
  CGZ53_RS04000 (CGZ53_04000) - 759491..761572 (-) 2082 WP_100911995.1 surface-anchored 5'-nucleotidase -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 66006.92 Da        Isoelectric Point: 8.7249

>NTDB_id=200690 CGZ53_RS03985 WP_037592266.1 755661..757430(+) (rcrQ) [Streptococcus uberis strain NZ01]
MKSRHVFMRLWFYLKPYKMSILLAFFLKVLSVVMSVLEPFVLGLAITEIGNNLIAIAKGVEGASMNYSYIAAILALYFVR
ALFFEIGSFGANYFMTKVVQASIKDLRSALSQKINKIPISYFDKHQFGDLLGRFTSDVDSVSNALQQSFLQMVNAILTIV
LALAMTFYIDSGLSLILLLAVPLIYFSSQFVLKRSQPYFKEQAKVLGEMNAFVQERLTGFTVLKLYGREETSINEFHDIT
NKLEKVGFKASFISGLMMPVLHFISDSVYLVIALVAGLKVLAGKLTIGNMQAFVQYTWQISQPIQTMTQLAPMIQSAKSS
LERIFDVLDEADDLSMEKFVLTKPLSGQVSFKNVNFSYRANQELIKDFNLEVSPGEMVAIVGPTGAGKTTLINLLMRFYD
VTSGSITVDGYDIRDLSRKDYRRQFGMVLQDAWLFGASIKENLQFGNLEASDTDIIDAAKTANVDHFIRTLPGGYDMVIN
QESSNISLGQKQLLTIARALLANPKILILDEATSSVDTRLELLIQKAMKVLMQGRTSFVIAHRLSTIQEADKILVLKDGR
IIEQGNHQSLLEQNGFYSELYHSQFKNAQ

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=200690 CGZ53_RS03985 WP_037592266.1 755661..757430(+) (rcrQ) [Streptococcus uberis strain NZ01]
ATGAAATCAAGACATGTTTTTATGCGATTATGGTTTTATTTAAAACCATATAAAATGTCAATTCTACTCGCATTTTTTCT
AAAAGTACTGAGTGTTGTCATGAGTGTGTTAGAACCTTTTGTTTTAGGATTAGCCATTACTGAAATTGGGAATAACTTAA
TAGCAATAGCTAAAGGAGTAGAAGGTGCTTCTATGAATTACTCTTATATAGCTGCGATATTAGCTCTTTATTTCGTTCGA
GCCCTCTTTTTTGAAATAGGTTCCTTTGGAGCTAATTATTTCATGACAAAAGTTGTTCAAGCCTCTATAAAAGATTTACG
CTCAGCGCTGAGCCAAAAAATTAATAAAATTCCCATTTCTTATTTTGACAAACATCAATTTGGTGATTTGCTAGGGCGAT
TCACCTCGGACGTCGATAGTGTTTCAAATGCCCTACAGCAATCCTTTCTTCAAATGGTTAACGCTATATTAACCATAGTC
TTAGCGCTTGCTATGACATTTTACATTGATTCTGGATTGTCATTAATATTATTACTAGCAGTCCCTTTGATTTATTTTTC
TAGTCAATTTGTCCTCAAAAGGTCTCAACCTTATTTTAAAGAACAAGCAAAGGTATTGGGTGAGATGAATGCCTTTGTTC
AAGAACGTTTGACTGGGTTTACCGTTTTAAAATTGTATGGTCGTGAAGAAACTAGTATTAATGAATTTCACGATATCACA
AATAAGTTAGAAAAAGTTGGATTTAAAGCTAGTTTCATTTCTGGATTGATGATGCCGGTTTTACATTTCATTTCTGATTC
TGTTTATTTGGTGATAGCTTTAGTGGCTGGCTTAAAAGTATTAGCAGGAAAACTAACCATTGGGAATATGCAAGCCTTTG
TACAATATACTTGGCAAATCAGTCAACCTATTCAAACAATGACCCAATTGGCTCCAATGATTCAAAGTGCCAAATCATCA
TTAGAAAGGATTTTTGATGTTTTAGATGAAGCAGATGACTTGTCAATGGAGAAGTTTGTTTTGACCAAACCTTTATCTGG
ACAGGTTTCTTTTAAAAATGTTAACTTTTCTTATCGAGCAAATCAGGAATTAATAAAAGATTTTAATTTGGAAGTTAGTC
CTGGTGAGATGGTTGCTATTGTTGGACCAACAGGAGCTGGAAAAACAACCTTAATCAATTTACTGATGCGTTTTTACGAT
GTGACCTCTGGGTCAATTACTGTTGATGGCTATGATATTAGAGACTTATCTCGAAAGGATTATCGTCGTCAATTTGGTAT
GGTTTTACAAGATGCTTGGCTTTTCGGAGCGAGTATTAAAGAGAACCTTCAGTTTGGAAACTTAGAAGCTAGCGACACTG
ACATCATTGATGCAGCAAAAACAGCTAATGTTGATCATTTTATCAGAACCTTGCCAGGAGGTTATGATATGGTTATTAAT
CAAGAGTCCTCTAACATTTCCTTAGGACAAAAACAACTGTTAACCATTGCAAGAGCGCTTTTGGCTAACCCGAAAATTTT
AATTTTAGATGAGGCAACTTCATCTGTAGATACACGTCTGGAATTATTAATTCAAAAAGCTATGAAAGTTTTGATGCAAG
GAAGAACAAGTTTTGTGATAGCTCATCGCTTATCTACAATACAAGAAGCTGATAAAATCTTGGTTTTGAAAGATGGTCGT
ATCATAGAACAAGGGAATCATCAGAGCCTTTTGGAACAAAATGGTTTTTACAGTGAACTTTATCATAGTCAGTTTAAAAA
TGCTCAGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(366-514)

ABC transporter transmembrane region (ABC_membrane)

(22-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

41.667

99.83

0.416

Multiple sequence alignment