Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   CGZ53_RS00210 Genome accession   NZ_CP022435
Coordinates   29783..30556 (+) Length   257 a.a.
NCBI ID   WP_046393178.1    Uniprot ID   -
Organism   Streptococcus uberis strain NZ01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 24783..35556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGZ53_RS09610 (CGZ53_00190) mreD 25583..26083 (+) 501 WP_100911820.1 rod shape-determining protein MreD -
  CGZ53_RS00195 (CGZ53_00195) pcsB 26179..27456 (+) 1278 WP_046392078.1 peptidoglycan hydrolase PcsB -
  CGZ53_RS00200 (CGZ53_00200) - 27565..28524 (+) 960 WP_012657590.1 ribose-phosphate diphosphokinase -
  CGZ53_RS00205 (CGZ53_00205) - 28615..29793 (+) 1179 WP_100911821.1 pyridoxal phosphate-dependent aminotransferase -
  CGZ53_RS00210 (CGZ53_00210) recO 29783..30556 (+) 774 WP_046393178.1 DNA repair protein RecO Machinery gene
  CGZ53_RS00215 (CGZ53_00215) plsX 30656..31663 (+) 1008 WP_012657593.1 phosphate acyltransferase PlsX -
  CGZ53_RS00220 (CGZ53_00220) - 31656..31901 (+) 246 WP_037593566.1 phosphopantetheine-binding protein -
  CGZ53_RS00225 (CGZ53_00225) purC 32046..32750 (+) 705 WP_046391011.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 30072.46 Da        Isoelectric Point: 6.4983

>NTDB_id=200653 CGZ53_RS00210 WP_046393178.1 29783..30556(+) (recO) [Streptococcus uberis strain NZ01]
METKKSLGLVLYNRNYREDDKLVKIFTETSGKRMFFVKNVGKSKLASVIQPLTIADFMMKLNEKGLSYIEDYNSVQNYPK
INQDLFKLSYASYLLALADAAISDNESDPHLFAFLKKTLDLMEEGLDYEVLTNIFEIQVLDRFGLHLNFNECVFCHRTGL
PFDFSHKYSGLLCPQHFHEDLHRSHLDPNVIYLLNQFQSIHFSDLNSISLKPEMKRKLRRFIDVLYDDYVGIHLKSKKFI
DDLDKWGDIMRTESNDS

Nucleotide


Download         Length: 774 bp        

>NTDB_id=200653 CGZ53_RS00210 WP_046393178.1 29783..30556(+) (recO) [Streptococcus uberis strain NZ01]
ATGGAAACTAAAAAAAGTTTAGGATTGGTTCTCTATAACAGAAATTACAGAGAAGATGACAAACTTGTCAAAATTTTTAC
TGAAACCTCAGGAAAAAGAATGTTCTTTGTCAAAAATGTGGGGAAATCAAAACTTGCCTCTGTCATACAACCATTAACCA
TTGCTGATTTTATGATGAAGTTGAATGAAAAAGGCTTATCTTACATTGAAGATTATAATAGTGTTCAGAACTATCCCAAA
ATTAATCAAGATTTATTTAAACTTTCATATGCTAGTTATCTCTTAGCATTAGCTGATGCAGCCATTTCTGATAATGAATC
TGATCCACATCTTTTTGCATTTTTGAAAAAAACCTTGGATTTGATGGAGGAAGGCTTGGATTACGAAGTTTTAACTAATA
TTTTTGAAATTCAGGTACTTGATCGCTTTGGACTTCATCTCAATTTTAATGAATGTGTTTTTTGTCATAGGACAGGGTTA
CCATTTGACTTTTCCCATAAATATTCAGGTCTTTTGTGCCCTCAACATTTTCATGAAGATCTTCACAGGAGTCATTTAGA
TCCAAACGTTATTTATTTATTAAATCAATTTCAATCCATTCACTTTTCTGATTTAAATAGCATTTCTTTAAAACCAGAAA
TGAAACGAAAACTCAGACGATTTATTGATGTTTTATATGATGATTATGTTGGTATCCATTTAAAAAGTAAAAAGTTTATT
GATGATTTAGATAAATGGGGAGATATTATGAGAACAGAGTCTAATGACTCCTGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-78)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

65.613

98.444

0.646

Multiple sequence alignment