Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   SDD27957_06405 Genome accession   CM001076
Coordinates   1238458..1240665 (-) Length   735 a.a.
NCBI ID   EFY02917.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1233458..1245665
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDD27957_06380 - 1234716..1235504 (-) 789 EFY02912.1 NIF3 (NGG1p interacting factor 3) family protein -
  SDD27957_06385 - 1235494..1236180 (-) 687 EFY02913.1 hypothetical protein -
  SDD27957_06390 - 1236252..1236908 (-) 657 EFY02914.1 endonuclease III -
  SDD27957_06395 - 1236905..1237588 (-) 684 EFY02915.1 DNA replication protein dnaD -
  SDD27957_06400 - 1237805..1238323 (-) 519 EFY02916.1 adenine phosphoribosyltransferase -
  SDD27957_06405 recJ 1238458..1240665 (-) 2208 EFY02917.1 single-stranded-DNA-specific exonuclease Machinery gene
  SDD27957_06410 - 1240662..1241426 (-) 765 EFY02918.1 putative oxidoreductase -
  SDD27957_06415 - 1241426..1242355 (-) 930 EFY02919.1 ribonuclease Z -
  SDD27957_06420 - 1242370..1243005 (-) 636 EFY02920.1 hypothetical protein -
  SDD27957_06425 - 1242998..1244236 (-) 1239 EFY02921.1 GTP-binding protein hflX -
  SDD27957_06430 miaA 1244318..1245208 (-) 891 EFY02922.1 tRNA delta(2)-isopentenylpyrophosphate transferase -
  SDD27957_06435 - 1245342..1245518 (+) 177 EFY02923.1 hypothetical protein -

Sequence

Protein


Download         Length: 735 a.a.        Molecular weight: 81924.71 Da        Isoelectric Point: 4.6307

>NTDB_id=20065 SDD27957_06405 EFY02917.1 1238458..1240665(-) (recJ) [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
MIKSKYSWKIEDKKPDDGFFKLAKAKGLSQTAAQLIYERGIRTEEALDEFLTADLSQLHDPYLLHDMEKAVLRIRQAIED
GEQILIYGDYDADGMTSASIVKEALDMMGAEPLVYLPNRFTDGYGPNQSVYKYFIEQEAVSLIITVDNGVAGHEAISYAQ
VQGIDVIVTDHHSLPEELPEAFAIIHPEHPDADYPFKHLAGCGVAFKLATALLESLPTDCLDLVAIGTIADMVSLTGENR
VLVKNGLTMLKHTERVGLQELMSLSPIDLDQFTEDAVGFQIAPQLNALGRLDNPNPAIELLTGFDDQEAQAIALMIKEKN
EERKALVQDIFDQAMAMVDPQKPVQVLAQAGWHPGVLGIVAGRIMEAIGQTVIVLAIDNGFAKGSARSLEAINIFEALSG
NRDLFTAFGGHAGAAGMTLPVDNLEALSDLLCQFVIEHGLDQTAKNTLTIDERLSLEDLSLDTLKSLDKLAPYGMDHPKP
IFYVKDIKVSQARTMGQDQSHLKFKVSQGKTSFDVLAFGQGSQLQDFQQATGLELAVTLSVNHWNGNTSLQLMLVDARVE
GVQLLDLRSKTAKLPEGIPTIEEDPNATVIVIKELPESFKDWRHQFADRTFDAIYFKNQIKHPYYLTGFGSREQFAKLYK
TIYQFPKFDVRHKLTDLSRYLNIDKLLLIKLIQIFEELAFVTIEDGLMTVNPQAQKRDISESRIYQELKELVKFQEIMAL
ASPQEMYDYLINSKP

Nucleotide


Download         Length: 2208 bp        

>NTDB_id=20065 SDD27957_06405 EFY02917.1 1238458..1240665(-) (recJ) [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
ATGATTAAATCCAAATATAGTTGGAAAATAGAAGACAAGAAGCCAGATGATGGCTTCTTTAAGCTAGCAAAAGCAAAGGG
CCTGTCCCAGACCGCCGCTCAGTTGATTTACGAGCGAGGGATAAGGACTGAAGAAGCCTTAGATGAGTTTTTAACAGCGG
ACTTATCTCAACTGCATGACCCTTATTTGCTACATGATATGGAAAAAGCTGTGTTAAGGATTCGTCAAGCCATTGAAGAT
GGTGAGCAGATTTTGATTTACGGAGACTATGATGCTGATGGCATGACGTCGGCATCCATTGTCAAAGAAGCCTTAGACAT
GATGGGAGCAGAGCCTTTGGTTTATCTTCCCAACCGCTTTACAGATGGCTACGGCCCCAACCAAAGTGTTTATAAGTACT
TTATTGAGCAGGAGGCTGTCTCCTTAATTATAACAGTGGATAATGGAGTAGCTGGGCACGAAGCGATTAGCTATGCCCAG
GTACAGGGAATTGATGTCATTGTAACTGACCATCATAGCCTGCCTGAAGAATTGCCAGAAGCCTTTGCTATCATTCACCC
TGAGCATCCCGATGCTGACTATCCTTTTAAACACTTAGCTGGCTGTGGCGTTGCCTTTAAATTAGCAACTGCTTTGCTAG
AAAGTTTGCCAACAGACTGTCTAGACTTAGTAGCTATTGGAACCATTGCTGATATGGTAAGCTTGACAGGTGAAAACCGT
GTCTTGGTCAAAAATGGCTTGACCATGCTAAAACACACTGAAAGAGTGGGGTTGCAGGAACTGATGTCCTTGTCTCCTAT
TGATTTGGACCAATTTACGGAAGATGCTGTTGGGTTTCAGATTGCTCCCCAGTTGAATGCCTTAGGTCGTTTAGATAATC
CTAATCCAGCCATCGAGCTACTGACGGGCTTTGATGATCAAGAAGCCCAAGCGATTGCCTTGATGATTAAGGAAAAAAAT
GAAGAGCGTAAGGCTTTGGTCCAAGACATTTTTGATCAAGCGATGGCTATGGTGGATCCTCAAAAACCAGTTCAAGTCTT
AGCTCAAGCTGGTTGGCATCCAGGTGTGCTAGGTATTGTAGCGGGTCGCATTATGGAAGCCATTGGACAGACGGTTATTG
TCTTAGCTATTGATAACGGTTTTGCGAAAGGCTCGGCCAGAAGTTTAGAGGCCATTAATATTTTTGAAGCCTTGAGTGGG
AATCGTGATCTTTTTACAGCCTTCGGTGGACATGCTGGTGCAGCTGGGATGACTTTACCCGTGGATAATTTAGAAGCTTT
ATCGGACTTGCTTTGTCAGTTTGTGATAGAACATGGCTTAGATCAGACTGCTAAAAATACGTTAACTATTGATGAAAGGC
TGTCTTTGGAGGATCTTAGTCTTGATACTTTAAAGAGTTTGGACAAACTAGCCCCCTATGGGATGGATCATCCTAAGCCA
ATCTTTTATGTTAAGGATATTAAAGTTAGTCAAGCGCGTACCATGGGTCAAGACCAGAGTCATCTTAAATTCAAAGTCAG
TCAGGGTAAGACCTCCTTTGATGTTCTGGCTTTTGGTCAAGGAAGCCAACTACAAGACTTTCAACAAGCTACTGGTTTAG
AGTTAGCGGTAACTTTATCCGTCAACCACTGGAATGGCAATACCAGTCTTCAACTAATGTTGGTTGACGCCCGTGTTGAA
GGAGTGCAGTTGCTTGATTTACGGTCAAAAACAGCTAAACTACCCGAAGGTATTCCGACGATTGAGGAAGATCCCAATGC
AACAGTTATTGTTATTAAGGAGCTTCCGGAATCTTTTAAAGACTGGCGTCATCAGTTCGCTGATAGAACCTTCGATGCCA
TTTATTTTAAAAATCAGATTAAGCACCCCTATTACCTAACAGGTTTTGGAAGTCGTGAACAGTTTGCTAAACTCTATAAA
ACCATTTACCAATTTCCAAAATTTGATGTGCGTCATAAATTGACTGACTTGAGTCGCTACTTAAACATTGACAAACTTTT
ATTGATTAAGCTCATTCAGATTTTTGAAGAGTTAGCTTTTGTGACGATTGAAGATGGCCTGATGACAGTTAACCCGCAAG
CGCAAAAGCGAGATATTTCTGAGAGTCGTATCTACCAAGAGCTAAAAGAACTCGTGAAGTTCCAAGAAATCATGGCCTTG
GCCAGTCCTCAAGAAATGTATGATTATTTAATCAATTCGAAACCATAA

Domains

Predicted by InterProScan.

DHHA1 domain (DHHA1)

(317-435)

RecJ OB domain (RecJ_OB)

(450-556)

DHH family (DHH)

(83-228)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(588-729)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

63.919

100

0.644
  recJ Bacillus subtilis subsp. subtilis str. 168

35.851

100

0.381

Multiple sequence alignment