Detailed information    

insolico Bioinformatically predicted

Overview

Name   lpp1977   Type   Machinery gene
Locus tag   BJK09_RS09890 Genome accession   NZ_CP017601
Coordinates   2198551..2199294 (-) Length   247 a.a.
NCBI ID   WP_027229195.1    Uniprot ID   -
Organism   Legionella pneumophila strain D6026     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2193551..2204294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJK09_RS09865 (BJK09_09745) - 2193973..2194623 (-) 651 WP_027229190.1 lysoplasmalogenase -
  BJK09_RS09870 (BJK09_09750) - 2194705..2195205 (-) 501 WP_027229191.1 hypothetical protein -
  BJK09_RS09875 (BJK09_09755) - 2195697..2196557 (+) 861 WP_027229192.1 polysaccharide deacetylase family protein -
  BJK09_RS09880 (BJK09_09760) - 2196691..2197887 (-) 1197 WP_027229193.1 murein transglycosylase A -
  BJK09_RS09885 (BJK09_09765) lpp1976 2197997..2198554 (-) 558 WP_027229194.1 hypothetical protein Machinery gene
  BJK09_RS09890 (BJK09_09770) lpp1977 2198551..2199294 (-) 744 WP_027229195.1 PilW family protein Machinery gene
  BJK09_RS09895 (BJK09_09775) lpp1978 2199296..2199610 (-) 315 WP_027229196.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  BJK09_RS09900 (BJK09_09780) hisC 2199771..2200880 (+) 1110 WP_027229197.1 histidinol-phosphate transaminase -
  BJK09_RS09905 (BJK09_09785) - 2200918..2201259 (+) 342 WP_027229198.1 4a-hydroxytetrahydrobiopterin dehydratase -
  BJK09_RS09910 (BJK09_09790) secF 2201434..2202351 (-) 918 WP_027229199.1 protein translocase subunit SecF -
  BJK09_RS09915 (BJK09_09795) secD 2202364..2204220 (-) 1857 WP_027229200.1 protein translocase subunit SecD -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 29012.72 Da        Isoelectric Point: 9.4014

>NTDB_id=200647 BJK09_RS09890 WP_027229195.1 2198551..2199294(-) (lpp1977) [Legionella pneumophila strain D6026]
MRRQTGFGLSEMLISLFLASIITITLTQIYIRSKPQYLKAQELLEINFDLLWISDLLSNSIRKAGFTPCLSVEKLKTYDS
RHAEREIINFQIENMPQAQLRINRMSDVYTEVINFMSPTQVVIQEPVISNIKHPLIISDCRHAEVHTVSKIDKLTNGYQI
TLKKPLKFRYDEIAYLGEWLEETWFTKQNEKGEKTLHYKLFQTEELSPLIHEFYVARRIVKQRPVLDFTIGSDKEKFRKI
SVSVRNL

Nucleotide


Download         Length: 744 bp        

>NTDB_id=200647 BJK09_RS09890 WP_027229195.1 2198551..2199294(-) (lpp1977) [Legionella pneumophila strain D6026]
ATGAGAAGACAAACAGGATTTGGTTTATCTGAGATGTTAATTAGTCTTTTCCTGGCAAGTATTATAACGATTACTCTTAC
TCAGATTTATATAAGAAGCAAACCTCAATACCTAAAGGCACAAGAACTGTTAGAAATTAATTTTGATTTGCTGTGGATTA
GCGATTTACTAAGCAACAGTATTAGAAAAGCTGGATTTACTCCGTGTTTAAGTGTCGAGAAATTAAAAACTTATGATTCT
CGACATGCAGAGAGAGAAATAATTAATTTTCAAATTGAAAATATGCCGCAAGCTCAGCTTCGTATCAATAGAATGAGTGA
TGTTTATACGGAAGTGATAAATTTCATGAGCCCAACACAAGTAGTGATTCAAGAGCCAGTAATATCAAATATAAAACATC
CATTAATTATTTCTGACTGCAGGCATGCCGAAGTACATACAGTCTCGAAAATAGATAAGCTCACTAATGGATATCAGATT
ACTTTAAAAAAACCATTGAAGTTCCGGTACGATGAAATTGCTTACCTGGGAGAGTGGCTGGAAGAAACATGGTTTACTAA
ACAAAATGAAAAGGGTGAAAAGACATTGCATTACAAATTGTTTCAAACAGAAGAATTAAGCCCATTAATTCATGAGTTTT
ATGTTGCCAGACGTATTGTCAAACAGAGGCCAGTATTAGATTTTACAATTGGTAGCGATAAGGAAAAATTCCGTAAGATC
AGTGTATCGGTACGAAACTTATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lpp1977 Legionella pneumophila str. Paris

88.664

100

0.887
  lpp1977 Legionella pneumophila strain ERS1305867

88.664

100

0.887

Multiple sequence alignment