Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CGC32_RS06790 Genome accession   NZ_CP022409
Coordinates   1368230..1368697 (+) Length   155 a.a.
NCBI ID   WP_000856645.1    Uniprot ID   -
Organism   Helicobacter pylori strain G272     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1363230..1373697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGC32_RS06770 (CGC32_06775) grpE 1363384..1363959 (+) 576 WP_089482957.1 nucleotide exchange factor GrpE -
  CGC32_RS06775 (CGC32_06780) dnaK 1363990..1365852 (+) 1863 WP_089482958.1 molecular chaperone DnaK -
  CGC32_RS06780 (CGC32_06785) - 1366115..1367032 (+) 918 WP_198360889.1 O-acetylserine-dependent cystathionine beta-synthase -
  CGC32_RS06785 (CGC32_06790) - 1367053..1368195 (+) 1143 WP_089482960.1 cystathionine gamma-synthase -
  CGC32_RS06790 (CGC32_06795) luxS 1368230..1368697 (+) 468 WP_000856645.1 S-ribosylhomocysteine lyase Regulator
  CGC32_RS06795 (CGC32_06800) - 1368967..1370652 (+) 1686 WP_332459525.1 bifunctional metallophosphatase/5'-nucleotidase -
  CGC32_RS06800 (CGC32_06805) tlpB 1370867..1372552 (+) 1686 WP_089482962.1 methyl-accepting chemotaxis protein TlpB -
  CGC32_RS06805 (CGC32_06810) - 1372582..1373361 (+) 780 WP_089482963.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17668.15 Da        Isoelectric Point: 6.8403

>NTDB_id=200647 CGC32_RS06790 WP_000856645.1 1368230..1368697(+) (luxS) [Helicobacter pylori strain G272]
MKTPKMNVESFNLDHTKVKAPYVRIADRKKGVNGDLIVKYDVRFKQPNKDHMDMPSLHSLEHLVAEIIRNHASYVVDWSP
MGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKATEVPASNEKQCGWAANHTLEGAQNLARAFLDKRAEWSEVGV

Nucleotide


Download         Length: 468 bp        

>NTDB_id=200647 CGC32_RS06790 WP_000856645.1 1368230..1368697(+) (luxS) [Helicobacter pylori strain G272]
ATGAAAACGCCAAAAATGAATGTAGAGAGTTTTAATTTGGATCACACCAAAGTCAAAGCCCCTTATGTGCGTATCGCTGA
TCGCAAAAAGGGCGTTAATGGGGATTTGATTGTCAAATACGATGTGCGCTTCAAACAGCCCAACAAAGATCACATGGACA
TGCCAAGCTTGCATTCTTTAGAGCATTTAGTCGCTGAGATTATCCGTAACCATGCCAGTTATGTTGTGGATTGGTCGCCT
ATGGGTTGCCAAACGGGATTTTATCTCACGGTGTTAAACCATGACAATTACACAGAGATTTTAGAGGTTTTAGAAAAGAC
GATGCAAGATGTGTTAAAGGCTACAGAAGTGCCTGCCAGCAATGAAAAGCAATGCGGTTGGGCGGCTAACCACACTTTAG
AGGGCGCGCAGAATTTAGCGCGTGCTTTTTTAGACAAACGCGCTGAGTGGTCTGAAGTGGGGGTTTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(7-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

41.135

90.968

0.374

Multiple sequence alignment