Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   CGC32_RS01570 Genome accession   NZ_CP022409
Coordinates   295617..296666 (-) Length   349 a.a.
NCBI ID   WP_089482303.1    Uniprot ID   -
Organism   Helicobacter pylori strain G272     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 290617..301666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGC32_RS01550 (CGC32_01550) rpsL 291603..292010 (+) 408 WP_001142321.1 30S ribosomal protein S12 -
  CGC32_RS01555 (CGC32_01555) rpsG 292026..292493 (+) 468 WP_001254357.1 30S ribosomal protein S7 -
  CGC32_RS01560 (CGC32_01560) fusA 292505..294583 (+) 2079 WP_000101840.1 elongation factor G -
  CGC32_RS01565 (CGC32_01565) - 295140..295430 (+) 291 WP_089482302.1 flagellar protein -
  CGC32_RS01570 (CGC32_01570) waaF 295617..296666 (-) 1050 WP_089482303.1 lipopolysaccharide heptosyltransferase II Regulator
  CGC32_RS01575 (CGC32_01575) hisS 296728..298056 (+) 1329 WP_089482304.1 histidine--tRNA ligase -
  CGC32_RS01580 (CGC32_01580) asd 298043..299083 (+) 1041 WP_089482305.1 aspartate-semialdehyde dehydrogenase -
  CGC32_RS01585 (CGC32_01585) - 299516..300634 (+) 1119 WP_089482306.1 DUF874 family protein -
  CGC32_RS01590 (CGC32_01590) - 300857..301600 (-) 744 WP_089482307.1 carbonic anhydrase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39424.07 Da        Isoelectric Point: 9.0794

>NTDB_id=200623 CGC32_RS01570 WP_089482303.1 295617..296666(-) (waaF) [Helicobacter pylori strain G272]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFILVGPQITCELFKKDEKIEAVFIDDTKKSFFRLLATYKL
AQKIGRCDIAIALNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAVTTAPKEYHQVEKYCFLFSQFLEKELDQKSVLPL
KLAFNLPIHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAVLLEEGHEIYFFGAKEDAIVSEEILKLIKGSLKNPLLLH
NAYNLCGKTSIEELIQHIAILDLFITNDSGPMHVAASVQTPLIALFGPTDEKETSPYKAQKTIVLNHHLSCAPCKKRVCP
LKNEKNHLCMKSITPLEVLEAAHTLLEKS

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=200623 CGC32_RS01570 WP_089482303.1 295617..296666(-) (waaF) [Helicobacter pylori strain G272]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCATTTTATCTTAGTGGGCCCACAAATCACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGACGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTTACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCGCATTAAACAACCATTTTTATTCTGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTTCTCAGCCATGCGGTAACTACTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAGAAAAAGAATTGGATCAAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAATCTCCCCATTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
TGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTGTTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTCATTAAAAAACCCTTTATTGCTCCAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATACAGCACATCGCTATTTTAGATTTATTCATCACTAA
CGATAGCGGCCCCATGCATGTGGCTGCTAGTGTGCAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTAGCCCCTATAAAGCTCAAAAAACGATTGTGTTAAACCACCATTTAAGCTGTGCACCTTGTAAAAAGCGAGTTTGCCCT
TTAAAGAATGAAAAAAACCACTTGTGCATGAAATCTATCACGCCCCTTGAAGTCCTAGAAGCCGCTCACACTCTTTTAGA
AAAGTCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.08

99.713

0.39

Multiple sequence alignment