Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CGC46_RS24690 Genome accession   NZ_CP022407
Coordinates   4638676..4639152 (-) Length   158 a.a.
NCBI ID   WP_001186728.1    Uniprot ID   -
Organism   Escherichia coli O121:H19 strain 16-9255     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4633676..4644152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGC46_RS24650 (CGC46_24690) gspL 4633801..4634979 (+) 1179 WP_000094965.1 type II secretion system protein GspL -
  CGC46_RS24655 (CGC46_24695) yghD 4634981..4635517 (+) 537 WP_000942788.1 GspM family type II secretion system protein YghD -
  CGC46_RS24660 (CGC46_24700) - 4635860..4636702 (-) 843 WP_024174205.1 DUF4942 domain-containing protein -
  CGC46_RS24665 (CGC46_24705) - 4636787..4636984 (-) 198 WP_000839243.1 DUF957 domain-containing protein -
  CGC46_RS24670 (CGC46_24710) - 4636996..4637484 (-) 489 WP_000761730.1 DUF5983 family protein -
  CGC46_RS24675 (CGC46_24715) - 4637532..4637858 (-) 327 WP_000854717.1 TA system toxin CbtA family protein -
  CGC46_RS24680 (CGC46_24720) - 4637948..4638316 (-) 369 WP_001285487.1 type IV toxin-antitoxin system YeeU family antitoxin -
  CGC46_RS24685 (CGC46_24725) - 4638392..4638613 (-) 222 WP_000692312.1 DUF987 domain-containing protein -
  CGC46_RS24690 (CGC46_24730) radC 4638676..4639152 (-) 477 WP_001186728.1 RadC family protein Machinery gene
  CGC46_RS24695 (CGC46_24735) - 4639168..4639641 (-) 474 WP_000855068.1 antirestriction protein -
  CGC46_RS24700 (CGC46_24740) - 4639735..4639980 (-) 246 WP_032212706.1 hypothetical protein -
  CGC46_RS24705 (CGC46_24745) - 4639980..4640288 (-) 309 Protein_4569 DUF932 domain-containing protein -
  CGC46_RS24715 (CGC46_24755) - 4641570..4641776 (-) 207 WP_000632607.1 AlpA family transcriptional regulator -
  CGC46_RS24720 (CGC46_24760) - 4642267..4642440 (+) 174 Protein_4572 GNAT family N-acetyltransferase -
  CGC46_RS24725 (CGC46_24765) - 4642680..4643555 (-) 876 WP_000491536.1 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17674.35 Da        Isoelectric Point: 7.2020

>NTDB_id=200602 CGC46_RS24690 WP_001186728.1 4638676..4639152(-) (radC) [Escherichia coli O121:H19 strain 16-9255]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLLTERLVQALALVDIRVPDHLIIGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=200602 CGC46_RS24690 WP_001186728.1 4638676..4639152(-) (radC) [Escherichia coli O121:H19 strain 16-9255]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGAGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATCAGTTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATTAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTCTCACCGAACGTCTGGTACAGGCACTGGCCCTGG
TTGACATCCGGGTGCCGGACCATCTGATAATCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

53.982

71.519

0.386