Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CGC46_RS20540 Genome accession   NZ_CP022407
Coordinates   3862909..3863577 (+) Length   222 a.a.
NCBI ID   WP_001298959.1    Uniprot ID   Q31UY8
Organism   Escherichia coli O121:H19 strain 16-9255     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3857909..3868577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGC46_RS20505 (CGC46_20555) yicC 3857928..3858791 (-) 864 WP_000621336.1 YicC/YloC family endoribonuclease -
  CGC46_RS20515 (CGC46_20565) rph 3858918..3859634 (+) 717 WP_001247089.1 ribonuclease PH -
  CGC46_RS20520 (CGC46_20570) pyrE 3859700..3860341 (+) 642 WP_000806180.1 orotate phosphoribosyltransferase -
  CGC46_RS20525 (CGC46_20575) slmA 3860378..3860974 (-) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  CGC46_RS20530 (CGC46_20580) dut 3861081..3861539 (-) 459 WP_000976070.1 dUTP diphosphatase -
  CGC46_RS20535 (CGC46_20585) coaBC 3861517..3862737 (-) 1221 WP_000050159.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  CGC46_RS20540 (CGC46_20590) radC 3862909..3863577 (+) 669 WP_001298959.1 DNA repair protein RadC Machinery gene
  CGC46_RS20545 (CGC46_20595) rpmB 3863794..3864030 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  CGC46_RS20550 (CGC46_20600) rpmG 3864051..3864218 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  CGC46_RS20555 (CGC46_20605) mutM 3864316..3865125 (+) 810 WP_001114543.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  CGC46_RS20560 (CGC46_20610) coaD 3865164..3865643 (-) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  CGC46_RS20565 (CGC46_20615) waaA 3865651..3866928 (-) 1278 WP_000891575.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  CGC46_RS20570 (CGC46_20620) rfaQ 3867341..3868399 (+) 1059 WP_000360402.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25274.35 Da        Isoelectric Point: 7.9748

>NTDB_id=200586 CGC46_RS20540 WP_001298959.1 3862909..3863577(+) (radC) [Escherichia coli O121:H19 strain 16-9255]
MKNNSQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=200586 CGC46_RS20540 WP_001298959.1 3862909..3863577(+) (radC) [Escherichia coli O121:H19 strain 16-9255]
GTGAAAAACAATTCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(9-77)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q31UY8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496