Detailed information NTG0020057

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: SDD27957_10365
• Genome accession: CM001076
• Coordinates: 1962342..1963604 (-)
• Length: 420 a.a.
• NCBI ID: EFY03656.1
• Uniprot ID: -
• Organism: Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1957342..1968604

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SDD27957_10345	-	1958859..1960127 (-)	1269	EFY03652.1	lantibiotic efflux protein	-
SDD27957_10350	-	1960222..1960923 (-)	702	EFY03653.1	hypothetical protein	-
SDD27957_10355	-	1960927..1961373 (-)	447	EFY03654.1	response regulator	-
SDD27957_10360	-	1961659..1962153 (-)	495	EFY03655.1	carbonic anhydrase	-
SDD27957_10365	radA	1962342..1963604 (-)	1263	EFY03656.1	DNA repair protein RadA	Machinery gene
SDD27957_10370	dut	1963786..1964232 (-)	447	EFY03657.1	deoxyuridine 5'-triphosphate nucleotidohydrolase	-
SDD27957_10375	-	1964341..1965108 (-)	768	EFY03658.1	hypothetical cytosolic protein	-
SDD27957_10380	-	1965226..1967010 (-)	1785	EFY03659.1	multidrug/protein/lipid ABC transporter family ATP-binding and permease	-

Sequence

Protein

• Length: 420 a.a.
• Molecular weight: 45746.40 Da
• Isoelectric Point: 5.1060

>NTDB_id=20057 SDD27957_10365 EFY03656.1 1962342..1963604(-) (radA) [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
MEEVEVKEIKNARVSLTGEKSKPVKLKDVDNINYHRTQTDMAEFNRVLGGGVVPGSLILIGGDPGIGKSTLLLQVSTQLA
NKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAIRTEIENLNPDFLIIDSIQTIMSPDITGVQGSVSQVREV
TAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSAGLVEV
LNPSQVFLEERLDGATGSAIVVTMEGSRSILAEVQSLVTPTVFGNARRTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYL
KSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQEAFLGEVGLTGEIRRVTRIEQRINEAAKLGFTKIYAPKNALQGISIP
NDIEVVGVTTVGQVLKAVFG

Nucleotide

• Length: 1263 bp

>NTDB_id=20057 SDD27957_10365 EFY03656.1 1962342..1963604(-) (radA) [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
GTGGAAGAAGTTGAGGTCAAAGAGATTAAAAATGCTCGTGTTAGTTTGACAGGTGAGAAAAGTAAGCCCGTTAAATTAAA
AGATGTGGACAATATCAACTATCATCGGACACAGACCGATATGGCAGAGTTTAACCGTGTCCTCGGTGGTGGTGTCGTTC
CGGGGAGCTTGATTTTAATTGGTGGCGATCCAGGTATTGGGAAGTCCACCTTACTCCTGCAAGTATCCACGCAGCTAGCT
AATAAGGGAACTGTTCTGTATGTTTCTGGAGAAGAATCAGCAGAGCAGATTAAACTGCGGAGTGAGCGTCTGGGGGATAT
TGACAATGAATTTTACCTCTATGCTGAAACCAATATGCAGGCCATTCGTACAGAGATTGAAAACCTGAATCCAGATTTTT
TGATTATTGATTCTATCCAAACCATCATGAGTCCTGATATTACAGGTGTTCAAGGATCTGTTAGTCAGGTGAGAGAAGTC
ACTGCCGAATTGATGCAACTTGCAAAGACTAACAACATTGCAACCTTTATTGTGGGACATGTTACCAAGGAAGGAACCTT
GGCTGGTCCCCGTATGTTAGAACACATGGTGGATACCGTTCTCTATTTTGAAGGAGAAAGGCATCACACCTTTCGCATCC
TGCGGGCGGTGAAAAACCGTTTTGGCTCTACCAACGAGATCGGTATTTTTGAAATGCAATCAGCTGGACTTGTTGAGGTC
TTAAATCCAAGTCAGGTCTTTCTTGAAGAGCGATTAGATGGTGCTACAGGATCCGCCATTGTGGTGACCATGGAAGGCAG
TCGTTCAATTTTAGCGGAAGTCCAATCTTTGGTCACCCCAACCGTTTTTGGCAATGCTAGACGAACCACTACGGGACTTG
ATTTCAATCGTGTGAGCCTAATCATGGCAGTTTTAGAAAAACGCTGTGGGCTTCTCTTGCAAAATCAAGATGCTTACCTC
AAGTCGGCTGGTGGTGTCAAACTAGACGAACCTGCCATTGATTTAGCTGTAGCCGTGGCCATCGCATCTAGTTATAAGGA
AAAACCAACCAACCCTCAAGAAGCTTTCTTAGGAGAGGTTGGATTGACTGGTGAGATTCGGCGGGTGACCCGTATCGAAC
AACGGATTAATGAAGCAGCCAAGCTTGGTTTTACTAAAATTTACGCCCCTAAAAATGCTCTGCAGGGCATCAGTATTCCT
AATGATATTGAAGTGGTGGGTGTAACAACAGTCGGTCAGGTTTTAAAGGCCGTTTTTGGCTAG

Domains

Predicted by InterproScan.

• Subunit ChlI of Mg-chelatase (ChlI) (327-392)

• AAA domain (AAA_25) (35-185)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Streptococcus mitis NCTC 12261	86.829	97.619	0.848
radA	Streptococcus pneumoniae D39	86.585	97.619	0.845
radA	Streptococcus pneumoniae R6	86.585	97.619	0.845
radA	Streptococcus pneumoniae Rx1	86.585	97.619	0.845
radA	Streptococcus mitis SK321	86.585	97.619	0.845
radA	Streptococcus pneumoniae TIGR4	86.585	97.619	0.845
radA	Bacillus subtilis subsp. subtilis str. 168	64	95.238	0.61