Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppD   Type   Regulator
Locus tag   SDD27957_10105 Genome accession   CM001076
Coordinates   1912161..1913213 (-) Length   350 a.a.
NCBI ID   EFY03608.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1907161..1918213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDD27957_10075 - 1907732..1908157 (-) 426 EFY03604.1 putative ribosomal-protein-alanine acetyltransferase -
  SDD27957_10080 - 1908159..1908857 (-) 699 EFY03605.1 M22 family non-proteolytic peptidase -
  SDD27957_10085 - 1909143..1909373 (+) 231 EFY03606.1 hypothetical protein -
  SDD27957_10090 - 1909375..1911057 (+) 1683 EFY03607.1 hypothetical protein -
  SDD27957_10105 oppD 1912161..1913213 (-) 1053 EFY03608.1 oligopeptide transport ATP-binding protein OppD Regulator
  SDD27957_10110 - 1913225..1914256 (-) 1032 EFY03609.1 oligopeptide transport system permease protein OppC -
  SDD27957_10115 - 1914266..1915180 (-) 915 EFY03610.1 di-tripeptide transport system permease protein -
  SDD27957_10120 - 1915448..1917103 (-) 1656 EFY03611.1 oligopeptide-binding protein OppA precursor -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 38697.39 Da        Isoelectric Point: 5.8490

>NTDB_id=20056 SDD27957_10105 EFY03608.1 1912161..1913213(-) (oppD) [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
MTNETILSVKNLHVDFKTYAGDVKAIRDISFDLKKGETLAIVGESGSGKSVTTRTLMGLNAKNANLSGEIDFKGKKLNTL
KEEEWVKVRGKEIAMIFQDPMTSLDPTMKIGMQIAEAILIHENISKQEALSRALELMHQVGIPNAEEHINDYPHQWSGGM
RQRAVIAIALAANPEILIADEPTTALDVTIQAQILKLMKEIQQQTKSSIIFITHDLGVVAGMADRVAVMYAGKIVEYGTV
DEVFYNPQHPYTWGLLNSMPTTDTASGSLESIPGTPPDLLNPPKGDAFAARNEFALDIDHVEAPPMFKVSDTHYAATWLL
DERAPKVTPPVQIQKRWAKWQKREGGKLNE

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=20056 SDD27957_10105 EFY03608.1 1912161..1913213(-) (oppD) [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
ATGACAAACGAAACCATTTTAAGTGTTAAAAACCTCCACGTTGATTTCAAAACCTATGCAGGGGATGTGAAAGCTATTCG
AGATATTAGTTTTGACCTCAAAAAAGGAGAAACGCTTGCGATTGTTGGGGAATCTGGATCAGGAAAATCAGTGACCACTA
GGACCTTGATGGGCTTAAATGCTAAAAATGCTAACCTTTCTGGGGAAATTGATTTTAAAGGAAAAAAGCTCAATACCCTT
AAGGAAGAAGAATGGGTTAAGGTGCGTGGTAAAGAAATTGCCATGATTTTCCAAGACCCAATGACCAGTCTCGATCCAAC
GATGAAAATCGGAATGCAAATTGCTGAAGCTATTTTGATTCATGAGAATATTAGTAAGCAAGAAGCCTTGAGTCGCGCCC
TTGAATTGATGCATCAAGTAGGTATTCCAAATGCTGAAGAGCATATTAATGATTATCCACATCAGTGGTCAGGTGGGATG
CGTCAGCGTGCTGTGATTGCTATTGCTCTTGCAGCTAATCCAGAAATCCTGATTGCTGATGAACCGACCACAGCGCTTGA
TGTTACCATTCAGGCACAAATATTGAAATTAATGAAAGAAATCCAACAACAGACGAAATCGTCTATTATTTTCATTACCC
ATGACCTTGGAGTTGTGGCTGGTATGGCTGATCGTGTCGCGGTAATGTATGCTGGAAAAATTGTTGAGTATGGAACGGTG
GATGAAGTCTTTTATAACCCACAACACCCTTATACATGGGGCTTGCTTAATTCTATGCCAACTACAGATACCGCCTCAGG
GAGTTTAGAATCTATTCCAGGAACGCCGCCTGACTTGCTTAATCCTCCTAAGGGAGATGCTTTTGCAGCCCGCAATGAAT
TTGCCTTGGATATTGATCATGTGGAGGCTCCGCCGATGTTTAAGGTCAGCGACACCCATTATGCGGCAACTTGGTTATTA
GATGAGCGAGCGCCCAAAGTCACTCCGCCGGTTCAAATTCAAAAACGATGGGCAAAATGGCAAAAACGAGAAGGAGGCAA
GCTAAATGAATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(27-183)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(235-297)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppD Streptococcus mutans UA159

79.714

100

0.797
  amiE Streptococcus salivarius strain HSISS4

55.685

98

0.546
  amiE Streptococcus thermophilus LMG 18311

56.627

94.857

0.537
  amiE Streptococcus thermophilus LMD-9

56.627

94.857

0.537

Multiple sequence alignment