Detailed information NTG0200531

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CEJ55_RS23645
• Genome accession: NZ_CP022393
• Coordinates: 4621583..4622575 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain E62
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4616583..4627575

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CEJ55_RS23620 (CEJ55_23630)	ygbN	4617238..4618602 (+)	1365	WP_000104439.1	GntP family transporter	-
CEJ55_RS23625 (CEJ55_23635)	-	4618641..4618877 (-)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
CEJ55_RS23630 (CEJ55_23640)	-	4618888..4620315 (-)	1428	WP_000863235.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
CEJ55_RS23635 (CEJ55_23645)	-	4620315..4620908 (-)	594	WP_039022715.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
CEJ55_RS23640 (CEJ55_23650)	-	4621055..4621462 (+)	408	WP_001208072.1	MarR family transcriptional regulator	-
CEJ55_RS23645 (CEJ55_23655)	rpoS	4621583..4622575 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
CEJ55_RS23650 (CEJ55_23660)	nlpD	4622638..4623732 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
CEJ55_RS23655 (CEJ55_23665)	pcm	4623917..4624543 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
CEJ55_RS23660 (CEJ55_23670)	surE	4624537..4625298 (-)	762	WP_001472109.1	5'/3'-nucleotidase SurE	-
CEJ55_RS23665 (CEJ55_23675)	truD	4625279..4626328 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
CEJ55_RS23670 (CEJ55_23680)	ispF	4626325..4626804 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CEJ55_RS23675 (CEJ55_23685)	ispD	4626804..4627514 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=200531 CEJ55_RS23645 WP_000081550.1 4621583..4622575(-) (rpoS) [Escherichia coli strain E62]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=200531 CEJ55_RS23645 WP_000081550.1 4621583..4622575(-) (rpoS) [Escherichia coli strain E62]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCGACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGATGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTACAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715