Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   SDD27957_04565 Genome accession   CM001076
Coordinates   891895..892575 (+) Length   226 a.a.
NCBI ID   EFY02564.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 886895..897575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDD27957_04545 - 887201..888733 (+) 1533 EFY02560.1 voltage gated chloride channel family protein -
  SDD27957_04550 - 888792..889715 (-) 924 EFY02561.1 AraC family regulatory protein -
  SDD27957_04555 - 889930..890544 (+) 615 EFY02562.1 lipase/acylhydrolase family protein -
  SDD27957_04560 - 890721..891848 (+) 1128 EFY02563.1 hypothetical membrane spanning protein -
  SDD27957_04565 radC 891895..892575 (+) 681 EFY02564.1 DNA repair protein RadC Machinery gene
  SDD27957_04580 - 893281..893925 (-) 645 EFY02565.1 redox-sensing transcriptional repressor Rex -
  SDD27957_04585 - 894104..894313 (-) 210 EFY02566.1 hypothetical protein -
  SDD27957_04590 - 894381..894728 (-) 348 EFY02567.1 hypothetical protein -
  SDD27957_04595 - 894718..895845 (-) 1128 EFY02568.1 Cysteine desulfurase -
  SDD27957_04600 - 895842..896822 (-) 981 EFY02569.1 ribose-phosphate pyrophosphokinase -
  SDD27957_04605 - 896951..897532 (-) 582 EFY02570.1 organic phosphate binding CYTH family protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25671.97 Da        Isoelectric Point: 7.3707

>NTDB_id=20052 SDD27957_04565 EFY02564.1 891895..892575(+) (radC) [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
MYSIKCDDIKLMPRERLMRMGAEALSNQELLAILLRTGNKEKHVLELSSYLLSHLESLADFKKLSLQELQTLAGIGKVKA
IEIKAMIELAARIQATEQTMSEKILSSVQIAEKMMAVLGDKKQEHLVVLYLDSQNRVIEEKTIFIGTVRRSIAEPREILY
YACKNMATSLIVVHNHPSGSIDPSPNDYAFTEKIKRSCEDIGIICLDHIIVSYQSYYSFREKSSLF

Nucleotide


Download         Length: 681 bp        

>NTDB_id=20052 SDD27957_04565 EFY02564.1 891895..892575(+) (radC) [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
ATGTATTCGATCAAATGCGATGATATAAAGCTGATGCCAAGAGAACGGTTGATGCGCATGGGGGCCGAAGCCTTAAGCAA
CCAAGAATTATTAGCCATTTTATTAAGGACAGGAAATAAAGAAAAACACGTTTTGGAATTATCTTCTTACCTGTTGTCAC
ATCTAGAAAGCTTAGCAGATTTTAAAAAGCTGTCCCTGCAAGAATTACAAACCTTAGCGGGAATCGGTAAAGTGAAAGCA
ATTGAAATCAAAGCAATGATTGAATTGGCTGCTAGGATTCAAGCAACTGAGCAAACGATGTCTGAGAAAATTCTTTCAAG
TGTTCAGATTGCAGAGAAGATGATGGCTGTTTTAGGCGATAAAAAGCAGGAGCATTTAGTGGTTCTGTATTTAGATAGTC
AAAATCGCGTGATTGAAGAGAAAACGATTTTTATAGGGACAGTCAGACGTTCGATCGCAGAACCTAGAGAAATTTTATAT
TACGCTTGTAAAAATATGGCAACAAGCCTTATTGTGGTTCACAATCATCCATCAGGAAGTATTGACCCGAGTCCTAATGA
TTACGCTTTTACTGAAAAAATAAAACGATCATGTGAAGACATAGGCATCATTTGCCTGGATCACATCATCGTCAGTTATC
AATCTTATTATAGTTTCCGAGAAAAATCATCTCTTTTCTAG

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(13-81)

RadC-like JAB domain (RadC)

(106-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus pneumoniae TIGR4

60.177

100

0.602
  radC Streptococcus pneumoniae R6

59.735

100

0.597
  radC Streptococcus pneumoniae D39

59.735

100

0.597
  radC Streptococcus gordonii str. Challis substr. CH1

56.637

100

0.566
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

44.131

94.248

0.416

Multiple sequence alignment