Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   SDD27957_09390 Genome accession   CM001076
Coordinates   1775612..1776337 (-) Length   241 a.a.
NCBI ID   EFY03477.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1770612..1781337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDD27957_09365 - 1770733..1771686 (+) 954 EFY03472.1 Abi family protein -
  SDD27957_09370 - 1771805..1772872 (+) 1068 EFY03473.1 DNA integration/recombination/inversion protein -
  SDD27957_09375 trmB 1773084..1773719 (-) 636 EFY03474.1 tRNA (guanine-N(7)-)-methyltransferase -
  SDD27957_09380 - 1773719..1774510 (-) 792 EFY03475.1 phosphotransferase enzyme family protein -
  SDD27957_09385 - 1774575..1775609 (-) 1035 EFY03476.1 protein ecsB -
  SDD27957_09390 pptA 1775612..1776337 (-) 726 EFY03477.1 ABC transporter ATP-binding protein Regulator
  SDD27957_09395 - 1776409..1776828 (+) 420 EFY03478.1 HIT-family protein -
  SDD27957_09400 - 1776825..1777145 (+) 321 EFY03479.1 hypothetical protein -
  SDD27957_09405 - 1777305..1778546 (-) 1242 EFY03480.1 LytR family transcriptional regulator -
  SDD27957_09410 - 1778585..1779106 (-) 522 EFY03481.1 Histone acetyltransferase -
  SDD27957_09415 - 1779099..1779548 (-) 450 EFY03482.1 ATP/GTP hydrolase -
  SDD27957_09420 - 1779723..1781183 (-) 1461 EFY03483.1 guanine-hypoxanthine permease -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26414.68 Da        Isoelectric Point: 4.6450

>NTDB_id=20052 SDD27957_09390 EFY03477.1 1775612..1776337(-) (pptA) [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
MLNIENLTGGYLNIPVLKEVSFSVGNGELVGLIGLNGAGKSTTINEIIGFLKPYQGEISIDGLTLAVDPAAYRKKIGFIP
ETPSLYEELTLAEHINTVAMAYDIDVELAQKRAEPFLKMFRLADKLDWFPVHFSKGMKQKVMIICAFVIDPSLFILDEPF
LGLDPLAISDLIQTLEVEKAKGKSILMSTHVLDSAEKMCDRFVILHHGQVRAQGTLADLQDAFGDASASLNDIYLALTKE
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=20052 SDD27957_09390 EFY03477.1 1775612..1776337(-) (pptA) [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
ATGTTAAACATTGAAAATCTAACGGGGGGTTACCTCAATATTCCCGTTTTAAAAGAGGTCTCATTTTCTGTTGGCAATGG
TGAATTAGTTGGGTTGATAGGCCTAAATGGAGCTGGAAAATCAACAACCATCAATGAAATTATTGGTTTTTTAAAACCTT
ATCAGGGAGAAATCTCGATTGATGGACTAACCTTGGCTGTAGATCCAGCTGCCTATCGTAAGAAAATTGGATTTATCCCA
GAGACACCTAGCCTCTATGAAGAATTAACTTTGGCAGAGCATATTAATACTGTAGCTATGGCCTATGATATTGATGTGGA
ATTGGCACAGAAACGAGCAGAACCGTTTTTAAAGATGTTTCGCTTAGCTGATAAATTAGATTGGTTTCCTGTTCATTTTT
CAAAAGGCATGAAGCAAAAAGTCATGATTATCTGTGCTTTTGTGATTGATCCAAGTCTGTTTATCCTTGACGAGCCATTT
TTAGGATTAGACCCGTTGGCTATCTCAGACTTGATTCAGACTTTGGAGGTTGAAAAAGCCAAAGGCAAATCGATTTTAAT
GAGTACTCATGTGCTTGACTCTGCTGAAAAAATGTGTGATCGTTTTGTCATTCTGCACCATGGTCAAGTACGGGCTCAGG
GCACGCTTGCTGACTTGCAGGATGCCTTTGGTGATGCTTCTGCTAGCCTTAACGATATTTACCTGGCATTGACAAAAGAG
GGCTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

75.732

99.17

0.751
  pptA Streptococcus thermophilus LMD-9

74.895

99.17

0.743

Multiple sequence alignment