Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   CEJ55_RS19440 Genome accession   NZ_CP022393
Coordinates   3798790..3800217 (+) Length   475 a.a.
NCBI ID   WP_000980597.1    Uniprot ID   -
Organism   Escherichia coli strain E62     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3793790..3805217
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEJ55_RS19410 (CEJ55_19420) pduU 3794167..3794517 (+) 351 WP_000211394.1 propanediol utilization microcompartment protein PduU -
  CEJ55_RS19415 (CEJ55_19425) - 3794522..3794965 (+) 444 WP_001369832.1 EutP/PduV family microcompartment system protein -
  CEJ55_RS19420 (CEJ55_19430) tmaR 3795066..3795395 (-) 330 WP_000450409.1 DUF496 family protein -
  CEJ55_RS19425 (CEJ55_19435) yeeA 3795567..3796625 (-) 1059 WP_001200891.1 FUSC family protein -
  CEJ55_RS19430 (CEJ55_19440) sbmC 3796823..3797296 (-) 474 WP_001105415.1 DNA gyrase inhibitor SbmC -
  CEJ55_RS19435 (CEJ55_19445) dacD 3797415..3798581 (-) 1167 WP_001296209.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  CEJ55_RS19440 (CEJ55_19450) sbcB 3798790..3800217 (+) 1428 WP_000980597.1 exodeoxyribonuclease I Machinery gene
  CEJ55_RS19445 (CEJ55_19455) tsuB 3800260..3800487 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  CEJ55_RS19450 (CEJ55_19460) tsuA 3800501..3801559 (-) 1059 WP_000492346.1 thiosulfate utilization transporter TsuA/YeeE -
  CEJ55_RS19455 (CEJ55_19465) plaP 3801738..3803096 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  CEJ55_RS25385 yoeI 3803086..3803148 (-) 63 WP_010723108.1 membrane protein YoeI -
  CEJ55_RS19460 (CEJ55_19470) yeeY 3803363..3804292 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  CEJ55_RS19465 (CEJ55_19475) yeeZ 3804338..3805162 (-) 825 WP_021562277.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54474.78 Da        Isoelectric Point: 5.4700

>NTDB_id=200519 CEJ55_RS19440 WP_000980597.1 3798790..3800217(+) (sbcB) [Escherichia coli strain E62]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISLLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=200519 CEJ55_RS19440 WP_000980597.1 3798790..3800217(+) (sbcB) [Escherichia coli strain E62]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGTTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGAGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCTATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581