Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   BJG91_RS08460 Genome accession   NZ_CP017577
Coordinates   1187940..1188218 (+) Length   92 a.a.
NCBI ID   WP_000842216.1    Uniprot ID   A0A9W5QHH7
Organism   Bacillus thuringiensis strain SCG04-02     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1182940..1193218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJG91_RS08435 (BJG91_08180) - 1183701..1184303 (+) 603 WP_065212728.1 hypothetical protein -
  BJG91_RS08440 (BJG91_08185) - 1184590..1185771 (+) 1182 WP_048538841.1 agmatine deiminase family protein -
  BJG91_RS08450 (BJG91_08190) - 1186295..1186546 (-) 252 WP_065212727.1 helix-turn-helix transcriptional regulator -
  BJG91_RS08455 (BJG91_08195) - 1186921..1187799 (+) 879 WP_000397979.1 helix-turn-helix domain-containing protein -
  BJG91_RS08460 (BJG91_08200) abrB 1187940..1188218 (+) 279 WP_000842216.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  BJG91_RS08465 (BJG91_08205) - 1188740..1189990 (+) 1251 WP_065212726.1 hypothetical protein -
  BJG91_RS08470 (BJG91_08210) - 1190058..1190816 (+) 759 WP_000347994.1 TSUP family transporter -
  BJG91_RS08475 (BJG91_08215) - 1191070..1191729 (+) 660 WP_065212725.1 CatB-related O-acetyltransferase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10378.28 Da        Isoelectric Point: 10.0092

>NTDB_id=200494 BJG91_RS08460 WP_000842216.1 1187940..1188218(+) (abrB) [Bacillus thuringiensis strain SCG04-02]
MKSRGITRKADSMGRIVIPMEIRRSLGIVEKDSLEMFIEEDQIILRKYQSPRACALTGDISDSNISLANGKIIVSPNGME
LLIKKLQQYLLK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=200494 BJG91_RS08460 WP_000842216.1 1187940..1188218(+) (abrB) [Bacillus thuringiensis strain SCG04-02]
ATGAAATCAAGAGGAATTACTCGTAAAGCAGATAGCATGGGGCGTATTGTTATTCCAATGGAAATAAGACGGAGTTTAGG
AATTGTAGAAAAAGATTCTCTTGAAATGTTTATAGAAGAGGACCAGATTATTTTACGAAAATATCAATCTCCAAGAGCTT
GTGCACTTACAGGGGATATTTCAGACAGCAATATTTCGTTAGCGAATGGGAAGATTATTGTAAGTCCAAACGGGATGGAA
CTGTTAATAAAGAAGTTACAGCAATATCTTTTAAAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

50

97.826

0.489

Multiple sequence alignment