Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   BJG91_RS06085 Genome accession   NZ_CP017577
Coordinates   739127..739414 (+) Length   95 a.a.
NCBI ID   WP_000648324.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain SCG04-02     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 734127..744414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJG91_RS06065 (BJG91_05875) - 735301..735498 (+) 198 WP_002183486.1 DUF4083 domain-containing protein -
  BJG91_RS06070 (BJG91_05880) - 735530..735991 (+) 462 WP_000024992.1 NUDIX hydrolase -
  BJG91_RS06075 (BJG91_05885) nadE 736041..736859 (-) 819 WP_000174904.1 ammonia-dependent NAD(+) synthetase -
  BJG91_RS06080 (BJG91_05890) - 737130..739010 (+) 1881 WP_065211670.1 ABC transporter permease -
  BJG91_RS06085 (BJG91_05895) abrB 739127..739414 (+) 288 WP_000648324.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  BJG91_RS06090 (BJG91_05900) - 739690..740637 (+) 948 WP_000099762.1 serine protease -
  BJG91_RS06095 (BJG91_05905) ugpC 740838..741941 (-) 1104 WP_065211669.1 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC -
  BJG91_RS06100 (BJG91_05910) - 742219..743082 (-) 864 WP_065211668.1 helix-turn-helix domain-containing protein -
  BJG91_RS06105 (BJG91_05915) - 743152..744012 (-) 861 WP_065211667.1 AraC family transcriptional regulator -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10587.32 Da        Isoelectric Point: 4.8408

>NTDB_id=200491 BJG91_RS06085 WP_000648324.1 739127..739414(+) (abrB) [Bacillus thuringiensis strain SCG04-02]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEADKIILQKYQPYNACQITGDVSEQNISLANGNITVGIEGAE
YLVKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=200491 BJG91_RS06085 WP_000648324.1 739127..739414(+) (abrB) [Bacillus thuringiensis strain SCG04-02]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATCCCTAAAGAATTACGCGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTTGTAGAAGCAGATAAAATCATTTTACAAAAATATCAACCTTACAATGCTT
GCCAAATCACAGGTGATGTTTCAGAGCAGAACATATCATTAGCAAATGGAAATATTACTGTTGGGATAGAGGGAGCGGAA
TATTTAGTAAAAGAAATAGAAAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.556

94.737

0.526

Multiple sequence alignment