Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CEJ55_RS06745 Genome accession   NZ_CP022393
Coordinates   1317254..1317730 (-) Length   158 a.a.
NCBI ID   WP_001186768.1    Uniprot ID   -
Organism   Escherichia coli strain E62     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1312254..1322730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEJ55_RS06710 (CEJ55_06710) - 1313048..1314583 (-) 1536 WP_049592737.1 EAL domain-containing protein -
  CEJ55_RS06715 (CEJ55_06715) - 1314654..1315499 (-) 846 WP_089180162.1 DUF4942 domain-containing protein -
  CEJ55_RS06720 (CEJ55_06720) - 1315584..1315781 (-) 198 WP_087891818.1 DUF957 domain-containing protein -
  CEJ55_RS25180 - 1315857..1316006 (-) 150 Protein_1210 DUF5983 family protein -
  CEJ55_RS06725 (CEJ55_06725) - 1316003..1316380 (-) 378 WP_049592807.1 TA system toxin CbtA family protein -
  CEJ55_RS06730 (CEJ55_06730) - 1316427..1316801 (-) 375 WP_089180163.1 type IV toxin-antitoxin system YeeU family antitoxin -
  CEJ55_RS06740 (CEJ55_06740) - 1316964..1317185 (-) 222 WP_001601167.1 DUF987 domain-containing protein -
  CEJ55_RS06745 (CEJ55_06745) radC 1317254..1317730 (-) 477 WP_001186768.1 RadC family protein Machinery gene
  CEJ55_RS06750 (CEJ55_06750) - 1317746..1318231 (-) 486 WP_089180164.1 antirestriction protein -
  CEJ55_RS06755 (CEJ55_06755) - 1318323..1319141 (-) 819 WP_049592655.1 DUF932 domain-containing protein -
  CEJ55_RS06760 (CEJ55_06760) - 1319231..1319464 (-) 234 WP_049592654.1 DUF905 family protein -
  CEJ55_RS06765 (CEJ55_06765) - 1319536..1322382 (-) 2847 WP_089180165.1 Ag43/Cah family autotransporter adhesin -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17689.32 Da        Isoelectric Point: 7.2020

>NTDB_id=200490 CEJ55_RS06745 WP_001186768.1 1317254..1317730(-) (radC) [Escherichia coli strain E62]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIIGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=200490 CEJ55_RS06745 WP_001186768.1 1317254..1317730(-) (radC) [Escherichia coli strain E62]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACACCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGTCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGTTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAGGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCTGACCGCCTTATTACGGAACGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAATCGGTGGCAGCCAGGTTTTCTCCTTTGCTGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment