Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CEJ55_RS02950 Genome accession   NZ_CP022393
Coordinates   594996..595664 (+) Length   222 a.a.
NCBI ID   WP_039022934.1    Uniprot ID   -
Organism   Escherichia coli strain E62     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 589996..600664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEJ55_RS02915 (CEJ55_02915) yicC 590015..590878 (-) 864 WP_000621336.1 YicC/YloC family endoribonuclease -
  CEJ55_RS02925 (CEJ55_02925) rph 591005..591721 (+) 717 WP_001247093.1 ribonuclease PH -
  CEJ55_RS02930 (CEJ55_02930) pyrE 591787..592428 (+) 642 WP_000806162.1 orotate phosphoribosyltransferase -
  CEJ55_RS02935 (CEJ55_02935) slmA 592465..593061 (-) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  CEJ55_RS02940 (CEJ55_02940) dut 593168..593626 (-) 459 WP_000976070.1 dUTP diphosphatase -
  CEJ55_RS02945 (CEJ55_02945) coaBC 593604..594824 (-) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  CEJ55_RS02950 (CEJ55_02950) radC 594996..595664 (+) 669 WP_039022934.1 DNA repair protein RadC Machinery gene
  CEJ55_RS02955 (CEJ55_02955) rpmB 595881..596117 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  CEJ55_RS02960 (CEJ55_02960) rpmG 596138..596305 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  CEJ55_RS02965 (CEJ55_02965) mutM 596403..597212 (+) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  CEJ55_RS02970 (CEJ55_02970) coaD 597251..597730 (-) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  CEJ55_RS02975 (CEJ55_02975) waaA 597738..599015 (-) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  CEJ55_RS02980 (CEJ55_02980) rfaQ 599428..600486 (+) 1059 WP_000360402.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25304.44 Da        Isoelectric Point: 7.9748

>NTDB_id=200475 CEJ55_RS02950 WP_039022934.1 594996..595664(+) (radC) [Escherichia coli strain E62]
MKNNSQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLMGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=200475 CEJ55_RS02950 WP_039022934.1 594996..595664(+) (radC) [Escherichia coli strain E62]
GTGAAAAACAATTCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTCATGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(9-77)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496