Detailed information
Bioinformatically predicted
Overview
| Name | comC | Type | Machinery gene |
| Locus tag | A4W85_RS09145 | Genome accession | NZ_CP017570 |
| Coordinates | 1797717..1798406 (+) | Length | 229 a.a. |
| NCBI ID | WP_056948148.1 | Uniprot ID | A0AAX0VAL7 |
| Organism | Latilactobacillus sakei strain TMW 1.578 | ||
| Function | DNA uptake (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1792717..1803406
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A4W85_RS09125 (A4W85_09080) | - | 1793158..1793709 (+) | 552 | WP_056948150.1 | cysteine hydrolase family protein | - |
| A4W85_RS09130 (A4W85_09085) | fusA | 1794280..1796367 (-) | 2088 | WP_016265721.1 | elongation factor G | - |
| A4W85_RS09135 (A4W85_09090) | rpsG | 1796463..1796933 (-) | 471 | WP_004270185.1 | 30S ribosomal protein S7 | - |
| A4W85_RS09140 (A4W85_09095) | rpsL | 1797023..1797436 (-) | 414 | WP_004270179.1 | 30S ribosomal protein S12 | - |
| A4W85_RS09145 (A4W85_09100) | comC | 1797717..1798406 (+) | 690 | WP_056948148.1 | prepilin peptidase | Machinery gene |
| A4W85_RS09150 (A4W85_09105) | - | 1798410..1798982 (-) | 573 | WP_056948146.1 | isochorismatase family protein | - |
| A4W85_RS09155 (A4W85_09110) | rpoC | 1799156..1802800 (-) | 3645 | WP_096584096.1 | DNA-directed RNA polymerase subunit beta' | - |
Sequence
Protein
Download Length: 229 a.a. Molecular weight: 26176.47 Da Isoelectric Point: 7.1616
>NTDB_id=200470 A4W85_RS09145 WP_056948148.1 1797717..1798406(+) (comC) [Latilactobacillus sakei strain TMW 1.578]
MLLYLIIFYSGACCASFLTVCAWRLPIEKSIITPRSHCDCCQQPLAWYDLLPLFSYLYLHGHCRTCHAQIKPTFLFSELI
GGLLACFIFSESLSWDLAYLLVILFYISLVDLFYYILYPIPLFASLAPLFYLYWPQNHWLGAIVFCCGLLLTTYWASGFG
FGDVELLTILTLWVGLESVLRILLAACLICILFQGIKKIWPSPKQATRQIPFIPYISMGVVIILLQTPQ
MLLYLIIFYSGACCASFLTVCAWRLPIEKSIITPRSHCDCCQQPLAWYDLLPLFSYLYLHGHCRTCHAQIKPTFLFSELI
GGLLACFIFSESLSWDLAYLLVILFYISLVDLFYYILYPIPLFASLAPLFYLYWPQNHWLGAIVFCCGLLLTTYWASGFG
FGDVELLTILTLWVGLESVLRILLAACLICILFQGIKKIWPSPKQATRQIPFIPYISMGVVIILLQTPQ
Nucleotide
Download Length: 690 bp
>NTDB_id=200470 A4W85_RS09145 WP_056948148.1 1797717..1798406(+) (comC) [Latilactobacillus sakei strain TMW 1.578]
ATGTTACTTTATTTAATCATCTTTTATAGCGGTGCTTGTTGCGCCTCATTTCTAACAGTTTGCGCCTGGCGCTTACCCAT
CGAAAAGTCCATTATCACACCACGTTCGCACTGCGATTGCTGTCAGCAACCACTGGCTTGGTATGATTTATTACCACTAT
TCAGCTACTTATACTTACATGGCCACTGCCGCACTTGTCATGCTCAGATTAAGCCCACTTTTTTATTCAGCGAACTAATT
GGTGGTCTATTGGCCTGCTTCATTTTTAGCGAATCCCTTTCTTGGGACCTCGCTTATTTACTCGTGATTCTTTTTTACAT
CAGTCTCGTTGACCTCTTCTACTATATTCTCTATCCAATCCCCTTATTCGCATCACTGGCGCCCCTCTTCTATTTGTATT
GGCCACAGAATCATTGGCTAGGAGCCATCGTCTTTTGTTGCGGGTTGTTGCTCACCACTTACTGGGCGTCTGGTTTTGGT
TTTGGCGATGTCGAGTTACTCACTATCCTAACGTTGTGGGTCGGCCTTGAATCCGTTTTGCGAATTCTCTTAGCAGCCTG
TTTAATCTGTATTCTATTTCAAGGCATCAAAAAAATCTGGCCATCGCCTAAACAAGCGACGCGCCAGATTCCTTTTATTC
CCTATATATCGATGGGAGTGGTGATAATACTCCTACAAACACCACAATAA
ATGTTACTTTATTTAATCATCTTTTATAGCGGTGCTTGTTGCGCCTCATTTCTAACAGTTTGCGCCTGGCGCTTACCCAT
CGAAAAGTCCATTATCACACCACGTTCGCACTGCGATTGCTGTCAGCAACCACTGGCTTGGTATGATTTATTACCACTAT
TCAGCTACTTATACTTACATGGCCACTGCCGCACTTGTCATGCTCAGATTAAGCCCACTTTTTTATTCAGCGAACTAATT
GGTGGTCTATTGGCCTGCTTCATTTTTAGCGAATCCCTTTCTTGGGACCTCGCTTATTTACTCGTGATTCTTTTTTACAT
CAGTCTCGTTGACCTCTTCTACTATATTCTCTATCCAATCCCCTTATTCGCATCACTGGCGCCCCTCTTCTATTTGTATT
GGCCACAGAATCATTGGCTAGGAGCCATCGTCTTTTGTTGCGGGTTGTTGCTCACCACTTACTGGGCGTCTGGTTTTGGT
TTTGGCGATGTCGAGTTACTCACTATCCTAACGTTGTGGGTCGGCCTTGAATCCGTTTTGCGAATTCTCTTAGCAGCCTG
TTTAATCTGTATTCTATTTCAAGGCATCAAAAAAATCTGGCCATCGCCTAAACAAGCGACGCGCCAGATTCCTTTTATTC
CCTATATATCGATGGGAGTGGTGATAATACTCCTACAAACACCACAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comC | Latilactobacillus sakei subsp. sakei 23K |
98.253 |
100 |
0.983 |