Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   SDD27957_07820 Genome accession   CM001076
Coordinates   1491322..1492389 (-) Length   355 a.a.
NCBI ID   EFY03180.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1486322..1497389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDD27957_07795 - 1486373..1487302 (-) 930 EFY03175.1 ribose transport system permease protein RbsC -
  SDD27957_07800 - 1487316..1488794 (-) 1479 EFY03176.1 ribose ABC transporter, ATP-binding protein -
  SDD27957_07805 - 1488810..1489208 (-) 399 EFY03177.1 D-ribose pyranase -
  SDD27957_07810 - 1489183..1490094 (-) 912 EFY03178.1 ribokinase -
  SDD27957_07815 - 1490087..1491070 (-) 984 EFY03179.1 putative ribose transport operon repressor -
  SDD27957_07820 sepM 1491322..1492389 (-) 1068 EFY03180.1 hypothetical protein Regulator
  SDD27957_07825 coaD 1492376..1492867 (-) 492 EFY03181.1 phosphopantetheine adenylyltransferase -
  SDD27957_07830 - 1492857..1493396 (-) 540 EFY03182.1 methylase -
  SDD27957_07835 - 1493631..1494623 (-) 993 EFY03183.1 asparagine synthetase AsnA -
  SDD27957_07840 - 1494603..1494734 (+) 132 EFY03184.1 hypothetical protein -
  SDD27957_07845 - 1494949..1495899 (-) 951 EFY03185.1 carbamate kinase -
  SDD27957_07850 - 1495919..1497250 (-) 1332 EFY03186.1 hypothetical protein -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38441.75 Da        Isoelectric Point: 7.7012

>NTDB_id=20046 SDD27957_07820 EFY03180.1 1491322..1492389(-) (sepM) [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
MKTIKKIKWWLISLIALVALLIVLFFPLPYYVEMPGGAYDIRSVVKVNGKEDKDKGSYQFVAVSLSRASLAQLLYAWLTP
FTEISSVEDTTGGYSDADYIRINQFYMETSQNAAVYQALTLADKPVTLDYKGVYVLDVSKDSTFKGALNLADTVTGVNHK
QFTSSTELVDYVSHLKLGDKVTVQFISNSESKSETGRIIKLKNGKNGIGIALTDHTKVNSADKIEFSTQGVGGPSAGLMF
TLDIYDQINKEDLRKGRHIAGTGTIGKNGEVGDIGGAGLKVVAAADAGAEIFFVPNNPVEKAVKKANPKAISNYEEAKRA
AKQLKNKNENCSCNNCSGCPSLPSSINEVSPLEDN

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=20046 SDD27957_07820 EFY03180.1 1491322..1492389(-) (sepM) [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
ATGAAAACAATTAAAAAAATTAAATGGTGGCTGATTAGCCTAATTGCCCTCGTGGCTCTGCTTATCGTCCTCTTTTTCCC
TCTTCCTTACTATGTTGAAATGCCTGGCGGAGCCTATGACATTCGATCTGTGGTCAAGGTTAATGGCAAAGAAGATAAAG
ATAAAGGCTCCTATCAGTTTGTGGCAGTCAGTCTCAGTCGAGCCAGTTTAGCTCAATTGCTCTATGCTTGGCTAACCCCT
TTTACTGAAATCAGTTCAGTTGAGGATACCACAGGCGGTTATAGCGATGCAGACTATATCCGCATTAATCAATTCTACAT
GGAAACCTCACAAAATGCTGCGGTCTATCAGGCATTGACCTTGGCAGACAAACCAGTTACTTTGGACTACAAAGGGGTCT
ATGTGTTAGATGTTAGCAAGGATTCAACCTTTAAAGGTGCTTTAAACTTAGCAGATACGGTAACGGGAGTGAATCACAAA
CAATTTACGAGTTCAACAGAACTTGTGGACTATGTCTCTCATTTAAAACTTGGTGATAAGGTGACTGTGCAGTTTATTAG
TAATAGCGAATCTAAGTCTGAAACAGGTCGTATCATCAAACTAAAAAATGGTAAAAATGGTATCGGCATTGCTTTAACAG
ACCATACTAAAGTCAATTCAGCAGACAAAATCGAGTTTAGTACCCAAGGTGTTGGGGGTCCTAGCGCAGGCTTAATGTTT
ACACTAGATATCTACGACCAAATTAATAAAGAAGACCTTCGTAAAGGAAGACATATCGCCGGGACAGGAACCATTGGTAA
AAATGGTGAAGTTGGAGATATTGGCGGTGCGGGTCTTAAGGTCGTTGCTGCTGCAGATGCTGGTGCTGAGATTTTCTTTG
TGCCGAATAATCCTGTGGAAAAAGCTGTTAAAAAAGCCAATCCAAAAGCTATTAGCAATTATGAAGAGGCCAAGCGAGCA
GCCAAGCAGTTAAAAAACAAAAATGAAAATTGTTCCTGTAACAACTGTTCAGGATGCCCTAGCCTACCTTCGTCAATAAA
CGAGGTTAGTCCTCTAGAGGACAACTAA

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(233-299)

PDZ domain (PDZ_2)

(130-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

70.238

94.648

0.665

Multiple sequence alignment