Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexA   Type   Machinery gene
Locus tag   SDD27957_03675 Genome accession   CM001076
Coordinates   724838..728470 (+) Length   1210 a.a.
NCBI ID   EFY02399.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 719838..733470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDD27957_03665 - 720526..721278 (-) 753 EFY02397.1 hypothetical protein -
  SDD27957_03670 rexB 721617..724841 (+) 3225 EFY02398.1 ATP-dependent nuclease subunit B Machinery gene
  SDD27957_03675 rexA 724838..728470 (+) 3633 EFY02399.1 ATP-dependent nuclease subunit A Machinery gene
  SDD27957_03680 - 728627..729730 (+) 1104 EFY02400.1 transaminase -
  SDD27957_03685 - 729799..730611 (+) 813 EFY02401.1 arginine-binding protein -
  SDD27957_03690 rpsU 730701..730877 (+) 177 EFY02402.1 30S ribosomal protein S21 -
  SDD27957_03695 - 731010..731384 (-) 375 EFY02403.1 large-conductance mechanosensitive channel -
  SDD27957_03700 dnaG 731512..733326 (+) 1815 EFY02404.1 DNA primase -

Sequence

Protein


Download         Length: 1210 a.a.        Molecular weight: 138536.33 Da        Isoelectric Point: 5.3002

>NTDB_id=20046 SDD27957_03675 EFY02399.1 724838..728470(+) (rexA) [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
MISFDPFLSPSAIAQLKEKEAQSSQAQKRTPEQIEAIYTSGQNILVSASAGSGKTFVMVERILDKILRGVSVDRLFISTF
TVKAATELRERIEKKLYAQIAKTSDPLLKAYLTDQLQALSQADIGTMDAFAQKVLIRYGYSIGISPQFRIMQDKAEQDIL
MRDVFSKLFEEFMTQDDSSLFKALVKNFSGNRKDASSFREVVYSCYAFSQSTENPKQWLEETFLKAAQTYQGIEDVPKQE
IQLLLSTMQDTADQLRDVTDMEDYGQLTKAGKPTAKYVKHLVIIEKLYEWARDFPHLYGRQGLSQLARDLTALLPTGNDV
TVAGIKYPVFKSLHQKLIRFRHLETILTYQPESIPLLELLKIVVLAFSKAYLDAKKQEGAFEFSDIAHFAIQILEENPDI
RQTYQDQYHEVMVDEYQDNNHMQERLLTLLSNGHNRFMVGDIKQSIYRFRQADPQIFNQKFKDYQTYPEQGKLILLKENF
RSQSEVLEASNAVFTHLMDESLGDILYDEQHQLVAGSIGQKIASPEHRAKLLLYNTDCEDHLDIEDADDISPSEVTIVAK
EIIRLYNEQHVPFEDITLLVSSRTRNDAIFHTFNQYGIPLVADGGQQNYLKSVEVMVMLDTLRTINNPRNDYALVALLRS
PMFAFDEDELTRLALQQGDDKEADCLYDKLERACLGTGTHPELVHQDLKLKLSRFIETLKSWRRYAKIRSLYDLIWKIFN
DRFYFDFVGSQVKAEQAQVNLYALALRANQFEQSGYKGLSRFIGMIDKVLETQNDLADVEVASPKQAVNLMTIHKSKGLE
FKYVFLLNCDKRFAMTDVHAPFILSRQQGIGIKYLADVKDVLEEKTLPSVKVSMETLPYQLNKQELRLATLSEQMRLLYV
AMTRAEKQIYLIGKASKEKSQEFTDGKRLGNHLPLALRERLMSFQDWLLAIADTFTAEDLHFDVQFIEESELSPEAIGHL
QSQQVLQPDDLKDNRQSADITRAIDMLNKVSQLNERYEAAIHLPTVRTPSQLKAAYEPLLDSDGVEVMEKSYRTLNEFTL
PEFSKQVKVEASQVGLALHRLMQAIPLTKPISLATIAQALEEIEAEAVVKAALDLQKVEQFFTETALGKRSQTYSTNLYR
EAPFAILKKDPLSQEDYVIRGIIDAFLLFEDHIELIDYKTDRYRHPSDLKTRYQQQLELYAEALSQIYGLPVTKKYLVLM
GGPELAIVTL

Nucleotide


Download         Length: 3633 bp        

>NTDB_id=20046 SDD27957_03675 EFY02399.1 724838..728470(+) (rexA) [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
GTGATATCATTTGACCCTTTTTTAAGTCCAAGTGCCATTGCGCAACTAAAAGAAAAAGAAGCTCAAAGTAGTCAAGCGCA
AAAAAGAACCCCAGAACAAATCGAAGCTATTTATACCAGTGGGCAAAATATCTTGGTGTCAGCCTCAGCTGGATCTGGAA
AAACCTTTGTTATGGTGGAACGGATTCTTGATAAAATCCTAAGGGGTGTTTCAGTAGATAGACTTTTTATTTCAACCTTT
ACGGTCAAAGCGGCTACCGAGTTACGTGAACGTATTGAAAAAAAACTGTATGCGCAAATTGCGAAAACCAGTGATCCTTT
GCTAAAAGCTTATCTAACAGACCAATTACAAGCTTTATCACAGGCTGATATTGGGACGATGGATGCTTTTGCTCAAAAAG
TCCTCATCCGTTACGGGTACAGCATTGGTATTTCCCCTCAATTTCGTATCATGCAAGATAAGGCGGAGCAAGACATTCTA
ATGCGAGATGTTTTTAGCAAATTATTTGAAGAATTTATGACTCAAGATGATTCGTCCTTGTTCAAGGCATTGGTCAAAAA
TTTTTCCGGTAATCGTAAAGATGCTTCTTCGTTTAGAGAAGTTGTCTATAGTTGCTACGCCTTTAGCCAATCTACCGAAA
ATCCGAAACAGTGGTTAGAAGAAACCTTTCTAAAAGCTGCTCAAACCTATCAAGGGATTGAAGATGTCCCTAAACAAGAG
ATTCAACTCTTGCTGTCAACCATGCAAGATACCGCAGATCAGTTAAGAGATGTGACTGACATGGAAGATTATGGTCAGCT
GACAAAAGCTGGGAAACCAACAGCCAAATACGTCAAACATTTGGTCATAATAGAGAAGCTTTACGAATGGGCGCGTGACT
TTCCTCACCTCTATGGGAGACAGGGGTTAAGCCAATTGGCAAGGGACCTGACAGCTCTTTTGCCGACTGGAAATGATGTG
ACAGTGGCTGGGATCAAATACCCTGTTTTCAAGAGTTTGCACCAAAAGCTCATCCGATTTAGGCACTTAGAAACCATTTT
AACCTATCAGCCAGAAAGTATTCCCTTATTAGAGCTTTTGAAGATTGTTGTGCTTGCTTTTTCGAAGGCTTATCTGGATG
CCAAAAAACAAGAAGGTGCTTTTGAATTTTCAGATATTGCCCATTTTGCCATACAGATTTTAGAAGAAAACCCTGACATC
AGGCAGACATATCAAGACCAGTATCATGAAGTCATGGTTGATGAGTACCAGGATAACAATCATATGCAAGAACGGCTGTT
GACCTTATTATCAAATGGACATAACCGTTTTATGGTGGGTGATATTAAACAATCCATTTACCGTTTTCGACAGGCAGATC
CTCAGATCTTCAATCAAAAATTCAAGGACTATCAAACCTATCCTGAGCAAGGAAAACTCATTTTATTGAAAGAGAATTTC
CGGAGTCAATCAGAAGTTTTAGAAGCTAGCAATGCTGTCTTTACTCATTTAATGGATGAGTCCTTAGGAGATATTTTGTA
TGATGAGCAGCACCAGTTGGTGGCAGGTAGCATTGGTCAAAAAATTGCTTCCCCAGAGCATCGTGCTAAGCTCCTGCTTT
ATAATACCGATTGCGAAGATCATCTTGACATAGAAGATGCGGATGACATTTCTCCTAGTGAAGTGACCATCGTTGCTAAA
GAAATCATTAGGTTATACAATGAACAGCACGTACCTTTTGAGGATATAACCCTCCTAGTATCATCCAGAACAAGAAATGA
TGCCATTTTTCATACCTTTAACCAATACGGTATTCCGCTTGTGGCAGATGGTGGTCAGCAAAATTACCTCAAGTCGGTTG
AAGTAATGGTGATGTTGGATACTTTACGTACTATTAATAACCCAAGAAATGATTATGCCTTGGTCGCCCTGTTGCGTTCA
CCGATGTTTGCTTTTGATGAAGATGAACTGACCAGGCTAGCTCTCCAACAAGGAGACGACAAAGAAGCAGATTGCCTCTA
TGATAAACTGGAGAGAGCATGCCTTGGCACAGGAACACACCCTGAGTTGGTCCATCAAGACCTAAAACTAAAACTAAGCA
GGTTTATAGAGACCTTAAAAAGCTGGCGCCGTTACGCTAAAATCAGGTCGCTCTATGATCTCATTTGGAAAATTTTCAAT
GACCGTTTCTATTTTGACTTTGTGGGTAGTCAAGTTAAAGCAGAACAGGCACAAGTTAATTTATATGCCTTAGCTCTTCG
AGCTAATCAGTTTGAACAATCAGGTTACAAAGGTCTCTCGCGTTTTATTGGCATGATTGACAAGGTGCTGGAAACACAAA
ATGATTTAGCCGATGTTGAGGTAGCTAGTCCTAAACAAGCGGTTAATCTGATGACCATTCACAAGTCCAAGGGATTGGAA
TTCAAGTATGTCTTTCTCCTCAACTGTGATAAGCGTTTTGCCATGACAGATGTCCATGCGCCATTTATTTTAAGCCGTCA
ACAGGGCATTGGTATTAAGTATTTAGCTGATGTCAAAGACGTTCTGGAAGAAAAAACGTTACCTTCAGTGAAAGTGAGTA
TGGAAACTCTCCCCTATCAACTCAATAAACAAGAGCTGCGTTTGGCGACTCTATCTGAGCAAATGCGCTTACTCTATGTT
GCTATGACACGGGCTGAAAAGCAAATCTATCTGATAGGCAAGGCAAGCAAGGAGAAAAGTCAAGAATTCACCGATGGCAA
ACGCTTGGGAAATCATTTGCCTTTAGCTCTGCGTGAGCGACTAATGTCCTTCCAAGATTGGCTTTTAGCGATAGCAGATA
CCTTCACTGCAGAAGATCTCCATTTTGATGTTCAGTTTATTGAAGAAAGTGAATTGAGTCCAGAAGCTATTGGTCATTTA
CAGAGTCAACAGGTTTTACAACCGGATGACCTCAAAGACAATCGTCAGTCAGCAGATATTACGAGAGCCATTGACATGCT
TAATAAGGTATCTCAACTTAATGAACGCTATGAAGCTGCCATTCACCTACCAACAGTCCGAACGCCAAGCCAACTAAAAG
CTGCTTATGAGCCCCTGTTGGATTCAGATGGCGTCGAGGTTATGGAAAAAAGTTATCGGACACTCAACGAATTTACCTTA
CCTGAATTTTCAAAGCAAGTTAAAGTTGAAGCTAGTCAGGTAGGGTTAGCCCTTCATCGACTCATGCAAGCCATCCCTTT
AACGAAGCCAATCAGTTTGGCAACAATTGCGCAAGCGTTGGAAGAAATAGAAGCTGAAGCAGTGGTCAAAGCAGCCCTTG
ATTTACAAAAGGTAGAACAGTTCTTTACTGAAACGGCTTTAGGAAAAAGGTCTCAAACCTACTCGACTAACCTTTACCGA
GAAGCTCCATTTGCCATCCTCAAGAAAGACCCTCTCAGCCAAGAAGATTATGTCATTCGTGGGATTATAGATGCCTTTCT
CTTGTTTGAAGATCATATCGAATTGATAGACTACAAAACAGATAGGTACCGTCATCCGAGTGACTTAAAAACACGCTATC
AACAACAATTGGAATTATATGCAGAAGCGCTTAGCCAGATCTATGGACTTCCTGTAACCAAAAAGTACCTGGTGCTGATG
GGCGGACCAGAGTTGGCTATTGTGACGCTTTGA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1040-1187)

UvrD-like helicase C-terminal domain (UvrD_C)

(474-892)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(30-465)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

51.093

71.818

0.367

Multiple sequence alignment