Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   A4W85_RS05215 Genome accession   NZ_CP017570
Coordinates   1012391..1013257 (-) Length   288 a.a.
NCBI ID   WP_025015773.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain TMW 1.578     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1007391..1018257
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W85_RS05200 (A4W85_05150) topA 1008626..1010710 (-) 2085 WP_056947604.1 type I DNA topoisomerase -
  A4W85_RS05205 (A4W85_05155) - 1010961..1011395 (-) 435 WP_011374692.1 Rrf2 family transcriptional regulator -
  A4W85_RS05210 (A4W85_05160) - 1011424..1012290 (-) 867 WP_251944563.1 NAD(P)H-binding protein -
  A4W85_RS05215 (A4W85_05165) dprA 1012391..1013257 (-) 867 WP_025015773.1 DNA-processing protein DprA Machinery gene
  A4W85_RS05220 (A4W85_05170) - 1013312..1014073 (-) 762 WP_112217684.1 ribonuclease HII -
  A4W85_RS05225 (A4W85_05175) ylqF 1014075..1014926 (-) 852 WP_167524711.1 ribosome biogenesis GTPase YlqF -
  A4W85_RS05230 (A4W85_05180) lepB 1015058..1015588 (-) 531 WP_025015770.1 signal peptidase I -
  A4W85_RS05235 (A4W85_05185) - 1015613..1015837 (-) 225 WP_011374698.1 YozE family protein -
  A4W85_RS05240 (A4W85_05190) - 1015848..1016477 (-) 630 WP_056947600.1 YpmS family protein -
  A4W85_RS05245 (A4W85_05195) - 1016490..1017401 (-) 912 WP_231953161.1 SGNH/GDSL hydrolase family protein -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 31845.84 Da        Isoelectric Point: 8.8338

>NTDB_id=200451 A4W85_RS05215 WP_025015773.1 1012391..1013257(-) (dprA) [Latilactobacillus sakei strain TMW 1.578]
MLTKNQLLLKVHLAAGFGPISELRLAAWLATSHNWALSALEIAQITRLPERYWPTFQASFQSTTLQRQCIEHEVRTTYLT
ILDKDYPQRLLETYLPPVLLFYRGDLRLLKQPCLAVVGARQATHYSKQSLEQLLQGLTATTIISGLAQGADAMAHEVALQ
RGLAPIGVIGTGINCSYPPQNEHLQQVVAEKGLLLSEYALGTPARRYQFPARNKIIAGLCHSLIVTEARHKSGSLITANL
ALQANRNVYAIPGRIDQSLSQGCNQLIAAGATPLLDKNILIEELRYFD

Nucleotide


Download         Length: 867 bp        

>NTDB_id=200451 A4W85_RS05215 WP_025015773.1 1012391..1013257(-) (dprA) [Latilactobacillus sakei strain TMW 1.578]
GTGTTAACTAAAAATCAATTACTCTTAAAAGTACATTTAGCGGCGGGTTTTGGGCCTATTAGTGAATTACGCTTGGCGGC
GTGGCTAGCAACCAGTCATAATTGGGCGTTATCGGCGTTAGAAATTGCGCAGATTACGCGCTTGCCGGAACGTTATTGGC
CGACTTTTCAAGCAAGTTTTCAAAGTACAACCTTACAACGCCAATGCATCGAACATGAAGTTCGAACGACTTATTTAACC
ATCTTAGATAAAGATTACCCACAACGCTTATTGGAAACCTATTTGCCGCCCGTTTTGTTATTTTATCGTGGTGATTTAAG
ATTGTTAAAACAGCCATGTCTCGCGGTAGTCGGGGCGCGTCAAGCGACTCATTATTCTAAACAATCACTAGAACAGTTAT
TACAAGGACTAACTGCCACTACGATTATTAGTGGGTTAGCACAAGGAGCGGATGCGATGGCCCACGAAGTTGCCTTGCAG
CGTGGTTTGGCCCCAATTGGGGTGATTGGCACGGGCATTAATTGCAGTTATCCACCACAAAATGAGCATTTACAACAGGT
AGTTGCTGAAAAAGGTTTGTTATTATCTGAATACGCTCTTGGTACACCAGCCCGGCGCTATCAATTTCCAGCCCGTAATA
AAATCATCGCGGGGTTATGTCATAGTTTAATTGTGACGGAAGCCCGGCACAAGAGTGGTAGCTTGATTACCGCTAACTTG
GCCCTTCAAGCTAATCGCAATGTCTATGCAATTCCGGGGCGCATTGATCAATCACTGTCACAGGGGTGCAACCAATTAAT
CGCCGCGGGAGCGACACCATTGTTAGATAAAAACATATTAATAGAAGAACTACGTTATTTTGATTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Latilactobacillus sakei subsp. sakei 23K

98.611

100

0.986

Multiple sequence alignment