Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   SDD27957_03670 Genome accession   CM001076
Coordinates   721617..724841 (+) Length   1074 a.a.
NCBI ID   EFY02398.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 716617..729841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDD27957_03645 - 717849..718226 (+) 378 EFY02393.1 Salt-stress induced protein -
  SDD27957_03650 - 718219..718605 (+) 387 EFY02394.1 hypothetical protein -
  SDD27957_03655 - 718678..719754 (+) 1077 EFY02395.1 ABC transporter permease protein -
  SDD27957_03660 - 719764..720432 (+) 669 EFY02396.1 ABC transporter ATP-binding protein -
  SDD27957_03665 - 720526..721278 (-) 753 EFY02397.1 hypothetical protein -
  SDD27957_03670 rexB 721617..724841 (+) 3225 EFY02398.1 ATP-dependent nuclease subunit B Machinery gene
  SDD27957_03675 rexA 724838..728470 (+) 3633 EFY02399.1 ATP-dependent nuclease subunit A Machinery gene
  SDD27957_03680 - 728627..729730 (+) 1104 EFY02400.1 transaminase -

Sequence

Protein


Download         Length: 1074 a.a.        Molecular weight: 123512.32 Da        Isoelectric Point: 5.1179

>NTDB_id=20045 SDD27957_03670 EFY02398.1 721617..724841(+) (rexB) [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
MKLIYTEMTYSMTDILVAEARQAASRGYRVFYLAPNSLSFEKEREVLTLLPERGSFSITVTRFAQMARYFTISNSESKQA
LDETALAMIFYRVLMQLTPEDLPVYGRLKDDPAFIKQLIDLYQELKTANLSVYELTELDTPGKQEDLIRIISLAEELMTQ
QDYHQDSALMSFAKTIATGQLDEQLSKTVLVIDGFSRFSAEEDYLLSLLNSKCQEIVIGSYISQKSYQKPFIKGNIYEAS
IQFLQGLAEQYETKPIYSQSEKVFAPSFSRVTQLFEAHHDFSQVDWQLEEKDKEDIHIWQSHQQKEEIEHVAKAIREKLY
EGYRYKDMLVLLGDVDAYQLQIGPIFDKFEIPYYLGKAESMTAHPLVQFIESLERSQRYNWRREDILNLLKSGLFGSFAD
SDVDRFEEYLQFADIKGFTKFSRPFTINSSRHYPLELLNEIREAIFSPLQALFKSQKQLGTSLLDKLMTFFKDVQLAENM
KNLGQNELETEKNEEVWKTFTDVLTSFYQTFGQEKLKLADCLSLIKMGMQSAHYRIVPATLDVVSIKSYDLVQPHSKPFV
YAIGLTQSHFPKQVKETGLLSDQERARINEITDSFQHFDIGSIENSRKNHQTALSLLNAATQELVLSVPALVNEFSDDLS
PYLKELMSFGLPLIDKGSNRFSYAASDIGNYKALLSRLVDLNREAIVADMTEQDKTFWTVALRYLRRQLRHQQVTLPMLD
DHLVTKPLASEVIEARFPSDRPLRLSSTALTVFYNNQYKYFLQYVLGLQEAESIHPDARIHGQYLHRVFELVMTDHTAAS
FDSKLAQAIHQTNQEKEFQYIYQDSAENRFSLDLLEDIAKSTASILRLNQNMTVSRQEEPFALQVTDQIVVHGIIDRIDQ
LSDGSLGIVDYKSSANQFDIGKFYNGLSPQLVTYLAALQQQFGPDDLGHLFGAMYLHLQEPKLDLATVKALDDKLVESIY
KELTYKGIFLESEKEYLANGAYQTRNAIYSTEELQTLLTYNALLYKKAAEQIKKGHFVINPYTSDGKSVQGEQLKAITRF
EADLDLDQARHLVTLPAKDKRQQFLTLMRKEDNL

Nucleotide


Download         Length: 3225 bp        

>NTDB_id=20045 SDD27957_03670 EFY02398.1 721617..724841(+) (rexB) [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
ATGAAACTAATTTATACAGAAATGACCTATTCAATGACAGACATTTTGGTAGCTGAGGCAAGGCAGGCTGCCTCTCGAGG
TTACCGTGTCTTTTACCTTGCTCCAAACTCTCTCTCGTTTGAAAAGGAAAGAGAAGTATTGACCTTGCTACCAGAACGAG
GGTCCTTCTCCATTACCGTGACGCGTTTTGCTCAGATGGCAAGGTATTTTACGATCTCTAACTCTGAGTCAAAACAAGCC
TTGGACGAGACAGCCTTAGCCATGATTTTTTACCGCGTCTTAATGCAGTTAACCCCTGAAGATCTTCCTGTTTATGGTCG
CTTGAAAGACGATCCGGCTTTTATTAAGCAGCTAATTGATCTCTATCAAGAATTAAAAACGGCTAACCTTAGTGTCTATG
AGTTAACCGAGTTAGATACTCCCGGTAAACAAGAAGACCTAATAAGAATTATCTCCCTTGCCGAAGAACTCATGACTCAG
CAAGATTACCATCAAGACAGTGCTTTGATGTCCTTTGCTAAAACTATTGCAACAGGTCAATTGGACGAACAACTGTCAAA
AACAGTGCTAGTTATTGATGGGTTTTCTCGTTTTTCTGCTGAAGAAGATTACCTATTATCTCTTCTTAACAGCAAGTGTC
AAGAGATTGTGATAGGAAGTTATATTAGTCAGAAATCCTACCAAAAACCGTTTATTAAAGGAAATATTTATGAGGCCAGT
ATCCAATTTTTGCAAGGGCTTGCTGAACAGTACGAGACAAAACCGATTTATTCTCAATCGGAAAAGGTCTTCGCGCCGTC
TTTTTCAAGAGTGACTCAGTTATTTGAAGCTCATCATGATTTTTCCCAAGTAGACTGGCAATTGGAAGAAAAAGATAAGG
AAGACATTCACATCTGGCAAAGCCATCAGCAAAAAGAAGAGATAGAGCATGTTGCTAAGGCTATTCGAGAAAAATTGTAT
GAAGGTTATCGCTATAAGGACATGTTGGTCTTGCTAGGAGATGTGGACGCCTACCAGTTACAAATTGGTCCCATTTTTGA
CAAATTTGAGATTCCTTACTATTTAGGGAAGGCAGAATCCATGACCGCTCATCCCTTAGTGCAATTTATAGAATCTTTAG
AGCGGAGCCAGCGCTATAATTGGCGTCGTGAAGATATTTTAAATCTGCTCAAATCAGGACTTTTTGGAAGTTTTGCCGAT
AGTGACGTTGACCGCTTTGAAGAATACCTCCAATTTGCAGACATTAAAGGATTTACTAAATTTTCAAGGCCTTTTACGAT
TAATTCCTCTCGTCATTACCCGTTGGAGTTGTTAAACGAGATAAGAGAAGCTATTTTTTCTCCTTTGCAAGCCTTATTTA
AGAGTCAAAAACAATTGGGAACGTCATTGCTAGATAAATTGATGACCTTTTTTAAAGATGTTCAGTTAGCAGAAAATATG
AAAAACCTGGGCCAAAATGAGCTAGAGACAGAGAAAAATGAAGAAGTTTGGAAAACATTCACCGACGTGTTAACCTCTTT
TTACCAGACTTTTGGTCAGGAAAAGTTGAAACTGGCGGACTGTCTTTCCTTGATCAAAATGGGAATGCAGTCGGCCCATT
ATCGTATTGTTCCAGCTACTTTAGATGTTGTTTCTATCAAATCCTATGATTTGGTGCAACCTCACTCAAAACCTTTTGTT
TATGCTATTGGTCTTACGCAATCTCATTTTCCAAAGCAAGTCAAAGAGACAGGGTTACTTTCTGATCAAGAGCGGGCAAG
AATTAATGAAATCACTGATAGCTTCCAGCATTTTGACATTGGCAGTATCGAAAATAGCAGGAAAAATCATCAGACAGCTC
TTTCACTTTTGAATGCAGCCACTCAAGAATTGGTCCTGAGTGTCCCAGCACTAGTGAACGAATTTTCAGATGACTTGTCT
CCTTACCTCAAGGAATTGATGTCCTTTGGTCTTCCACTGATTGATAAAGGAAGCAATCGCTTTTCTTATGCTGCTAGTGA
TATTGGCAACTATAAGGCCCTTTTGTCACGTTTAGTTGACCTTAATCGAGAAGCTATAGTGGCTGACATGACCGAACAGG
ACAAGACTTTTTGGACTGTTGCCCTTCGTTATCTCCGACGACAATTAAGGCATCAGCAGGTCACACTTCCTATGCTAGAT
GACCATTTGGTGACGAAACCTCTAGCCTCCGAGGTTATTGAGGCACGTTTTCCAAGCGATCGTCCGCTTAGACTATCATC
GACTGCTCTGACTGTTTTTTATAATAACCAGTACAAGTATTTTTTGCAGTATGTCCTAGGATTACAAGAAGCCGAATCTA
TTCATCCTGATGCCCGCATTCATGGGCAATATTTACATCGGGTATTTGAATTGGTGATGACGGATCACACAGCAGCTTCC
TTTGACAGCAAATTGGCGCAAGCTATTCATCAAACTAACCAAGAAAAAGAATTTCAATATATCTATCAAGACAGTGCTGA
AAATCGTTTCAGTTTAGACTTGCTTGAAGATATTGCTAAGTCGACCGCTTCTATTTTGCGTCTTAATCAGAATATGACTG
TAAGTCGACAAGAAGAACCTTTTGCCCTGCAAGTGACAGATCAGATAGTGGTCCATGGGATAATTGACCGGATCGACCAG
TTAAGTGATGGGAGTCTAGGGATTGTTGATTATAAATCCAGCGCGAATCAGTTTGATATCGGGAAATTTTACAATGGGTT
AAGCCCACAACTTGTTACTTATCTGGCTGCTTTGCAGCAACAATTTGGACCAGATGATTTAGGGCACTTATTTGGTGCCA
TGTACTTGCATTTGCAAGAGCCTAAGTTAGACTTAGCAACTGTCAAAGCACTTGATGATAAACTGGTTGAAAGTATTTAT
AAAGAGTTGACCTATAAAGGAATCTTTTTAGAGTCTGAAAAAGAATATTTAGCAAATGGTGCTTACCAGACGCGAAATGC
AATTTACTCCACTGAAGAGTTACAAACCCTCTTGACTTATAATGCTCTTCTTTACAAGAAAGCAGCAGAGCAGATTAAGA
AAGGGCATTTTGTCATTAACCCTTATACAAGTGATGGGAAGTCTGTTCAAGGAGAACAACTCAAGGCTATTACACGTTTT
GAGGCTGATCTTGATTTGGACCAAGCAAGGCATCTTGTAACGCTCCCTGCCAAAGATAAGCGCCAGCAGTTTTTAACGTT
AATGAGAAAGGAGGATAACCTGTGA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(744-1023)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

42.518

100

0.434

Multiple sequence alignment