Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   SDD27957_06925 Genome accession   CM001076
Coordinates   1352383..1354185 (-) Length   600 a.a.
NCBI ID   EFY03017.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1347383..1359185
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDD27957_06900 - 1348054..1348725 (-) 672 EFY03012.1 O-methyltransferase -
  SDD27957_06905 - 1348813..1350024 (-) 1212 EFY03013.1 putative oxalate:formate antiporter -
  SDD27957_06910 - 1350356..1350976 (-) 621 EFY03014.1 hydrolase, haloacid dehalogenase-like family protein -
  SDD27957_06915 - 1350976..1351518 (-) 543 EFY03015.1 acetyltransferase (GNAT) family protein -
  SDD27957_06920 - 1351641..1352195 (-) 555 EFY03016.1 putative chromate reductase -
  SDD27957_06925 pepF 1352383..1354185 (-) 1803 EFY03017.1 putative oligopeptidase Regulator
  SDD27957_06930 - 1354196..1355155 (-) 960 EFY03018.1 putative competence protein/transcription factor -
  SDD27957_06935 - 1355345..1356169 (-) 825 EFY03019.1 transposase -
  SDD27957_06940 - 1356202..1356495 (-) 294 EFY03020.1 transposase -
  SDD27957_06945 - 1356603..1357763 (-) 1161 EFY03021.1 major facilitator family protein -
  SDD27957_06950 - 1357855..1358571 (-) 717 EFY03022.1 Putative 16S pseudouridylate synthetase -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69209.03 Da        Isoelectric Point: 4.6827

>NTDB_id=20042 SDD27957_06925 EFY03017.1 1352383..1354185(-) (pepF) [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
MTDNRSHLEEKYTWDLSTIFATDKDWEAEVSGLASEIDTAKDFAGHLLDSSANLLTITDTYLELARRVEKVYVYAHMKND
QDTTVAKYQEYQAKASGLYAKFSEVFSFYDPEVMALSQEDYQAFLVETPELKRYHHFFDKLFQTRDHVLSQAEEELLAGA
QEIFNGAEETFSILDNADIVFPVVKNDKGEDVELTHGNFISLMESKDRSVRQAAYEAMYSTYEQFQHTYAKILQTNVKVQ
NYKARVHKYDSARQAAMAANFIPEAVYDTLLETVNKHLPLLHRYLKLRQDVLGLDELKMYDVYTPLSETDLAIGYDEALE
KAEKVLAVFGKDYADRVHRAFTERWIDVHVNKGKRSGAYSGGSYDTNAFMLLNWQDTLDNLYTLVHETGHSLHSTFTRET
QPYVYGDYSIFLAEIASTTNENIMTEALLNEVQDEKERFAILNHYLDGFRGTVFRQTQFAEFEHAIHQADQKGEVLTSEY
LNQLYAELNEKYYGLSKDDNHFIQYEWARIPHFYYNYYVYQYATGFAAASYLADKIVHGTQDDIDHYLTYLKSGNSDYPL
EVIAKAGVDMAKGDYLDAAFKVFEERLTELEALVAKGAHR

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=20042 SDD27957_06925 EFY03017.1 1352383..1354185(-) (pepF) [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
ATGACAGATAATCGTAGTCATTTAGAAGAAAAGTACACTTGGGATTTGAGCACTATTTTTGCAACAGATAAGGATTGGGA
AGCTGAAGTGAGTGGCTTAGCTAGTGAAATTGACACGGCTAAGGATTTTGCAGGTCATTTACTAGATTCTAGCGCTAATC
TGTTGACAATTACAGATACTTATTTAGAGTTGGCTCGTCGTGTTGAGAAAGTCTATGTTTATGCGCATATGAAAAATGAT
CAAGACACGACTGTTGCTAAATATCAAGAATATCAGGCTAAGGCTTCTGGCTTGTATGCTAAATTTAGCGAAGTGTTTTC
ATTCTATGACCCAGAAGTTATGGCATTGAGTCAGGAAGATTACCAAGCTTTTCTTGTGGAAACTCCTGAGTTAAAAAGAT
ATCATCATTTCTTTGACAAATTGTTCCAGACACGTGACCATGTGCTTAGTCAGGCTGAAGAGGAATTATTAGCAGGAGCC
CAAGAAATTTTCAACGGCGCTGAAGAAACCTTTAGCATTCTGGATAACGCTGATATTGTCTTTCCAGTAGTTAAAAATGA
TAAGGGGGAAGATGTTGAATTAACCCATGGTAACTTCATCAGTTTAATGGAATCTAAAGATCGTAGCGTTCGCCAAGCTG
CTTACGAGGCAATGTATAGCACTTATGAACAGTTCCAACACACTTATGCTAAAATCTTACAAACAAATGTTAAGGTTCAA
AATTACAAGGCGCGTGTTCATAAATACGATTCAGCACGTCAAGCTGCTATGGCTGCTAACTTTATTCCAGAAGCTGTTTA
CGACACTTTATTAGAAACAGTTAACAAACATTTACCACTTTTACACCGTTACTTGAAACTTCGCCAAGATGTTCTTGGTC
TAGATGAGTTGAAGATGTATGATGTTTACACACCATTATCTGAAACAGACCTAGCCATTGGTTATGATGAGGCTTTGGAA
AAAGCTGAGAAGGTTTTGGCTGTTTTTGGTAAGGATTATGCAGACCGAGTGCATCGTGCCTTTACAGAACGTTGGATTGA
TGTTCATGTCAATAAAGGGAAGCGCTCTGGAGCTTATTCAGGTGGTTCCTACGATACCAATGCCTTTATGCTATTAAACT
GGCAAGATACCTTAGACAATCTATACACTTTAGTTCATGAAACTGGGCACAGTTTGCATTCTACTTTCACTCGTGAAACA
CAGCCTTATGTGTATGGAGATTACAGTATTTTCTTGGCAGAAATTGCATCTACAACTAATGAAAACATCATGACAGAAGC
TCTCTTAAATGAGGTTCAAGATGAGAAAGAACGCTTTGCTATTTTAAACCATTACCTTGACGGTTTCCGTGGCACTGTTT
TCCGTCAAACCCAATTTGCTGAGTTTGAACACGCGATCCATCAAGCTGATCAAAAAGGAGAAGTGTTAACGAGCGAATAC
CTCAACCAATTGTATGCTGAGTTGAATGAAAAGTATTATGGGTTGAGTAAAGACGATAATCATTTTATTCAGTATGAATG
GGCACGTATTCCTCACTTCTATTACAATTATTATGTTTATCAGTATGCTACAGGCTTTGCAGCAGCAAGTTATTTAGCCG
ATAAGATTGTTCACGGAACGCAAGACGATATTGATCATTACTTGACCTACCTCAAGTCAGGAAATTCTGACTACCCACTT
GAGGTCATCGCTAAAGCGGGTGTTGATATGGCAAAAGGTGACTATCTTGACGCAGCCTTTAAAGTCTTCGAAGAACGTCT
AACAGAACTTGAAGCCCTTGTTGCAAAGGGAGCTCATCGCTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-580)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

71.786

99.833

0.717

Multiple sequence alignment