Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   SDD27957_03630 Genome accession   CM001076
Coordinates   712956..713795 (+) Length   279 a.a.
NCBI ID   EFY02390.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 707956..718795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDD27957_03605 - 708965..710371 (+) 1407 EFY02385.1 F0F1 ATP synthase subunit beta -
  SDD27957_03610 atpC 710384..710800 (+) 417 EFY02386.1 F0F1 ATP synthase subunit epsilon -
  SDD27957_03615 - 711141..711365 (+) 225 EFY02387.1 hypothetical protein -
  SDD27957_03620 - 711430..712701 (+) 1272 EFY02388.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  SDD27957_03625 - 712705..712893 (+) 189 EFY02389.1 epuA protein -
  SDD27957_03630 endA 712956..713795 (+) 840 EFY02390.1 DNA-entry nuclease Machinery gene
  SDD27957_03635 - 714078..715121 (+) 1044 EFY02391.1 phenylalanyl-tRNA synthetase subunit alpha -
  SDD27957_03640 pheT 715331..717736 (+) 2406 EFY02392.1 phenylalanyl-tRNA synthetase subunit beta -
  SDD27957_03645 - 717849..718226 (+) 378 EFY02393.1 Salt-stress induced protein -
  SDD27957_03650 - 718219..718605 (+) 387 EFY02394.1 hypothetical protein -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 30726.45 Da        Isoelectric Point: 9.6433

>NTDB_id=20036 SDD27957_03630 EFY02390.1 712956..713795(+) (endA) [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
MLNSFLLILLVLGSSYLAKSDFIASNHPIKQIYRTVLGDKGESSSESKEVHSEVPTEALSASVLTKSIKEQLASDIEWNG
AGAYIINRNKTDLTASVASLPYANNETKWVQGQKVPTRANALLTKSTRQYRNRYQTDNAYRTFKPAGWHQLHHLKGNYDH
AVDRGHLLGYALVGGLKGFDASTSNPDNIATQLSWANQADKPYSTGQNYYEGLVRRALDKGKRVRYRVTLLYDGDNLLAS
GSQLEAKSADGSLAFNVFVPNVQAGLTVDYRTGQIAINP

Nucleotide


Download         Length: 840 bp        

>NTDB_id=20036 SDD27957_03630 EFY02390.1 712956..713795(+) (endA) [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
GTGCTTAATTCCTTCTTATTGATTTTGTTAGTGTTGGGGTCTAGTTACCTTGCTAAGAGTGATTTCATAGCTAGCAATCA
CCCTATTAAGCAAATTTATCGTACCGTTTTGGGAGATAAGGGTGAATCATCATCAGAATCAAAAGAAGTCCATAGTGAGG
TTCCCACAGAAGCCCTATCCGCTTCTGTCTTAACCAAATCCATTAAGGAACAATTAGCTTCCGATATTGAATGGAATGGA
GCAGGCGCCTATATTATCAACAGGAACAAAACAGATTTAACCGCAAGCGTAGCCAGTCTGCCCTATGCCAATAATGAAAC
CAAATGGGTCCAAGGACAAAAGGTTCCTACTAGAGCTAATGCCTTACTTACTAAGTCGACACGACAGTATCGGAATCGCT
ATCAAACGGACAATGCTTATCGTACCTTCAAGCCTGCTGGTTGGCACCAATTACATCACTTAAAAGGAAATTATGATCAT
GCAGTTGATAGAGGACATTTGCTAGGTTATGCTTTAGTTGGTGGACTGAAAGGTTTTGATGCTTCTACCAGTAATCCTGA
TAATATTGCCACTCAACTAAGTTGGGCCAATCAAGCAGATAAACCCTATTCGACAGGTCAAAATTACTATGAAGGCTTAG
TACGTCGTGCATTGGATAAGGGTAAAAGGGTCCGTTATCGTGTTACCTTGCTTTATGATGGTGATAATCTCTTAGCCAGT
GGTAGCCAGTTAGAGGCCAAATCTGCCGATGGGAGTTTAGCATTTAACGTGTTTGTTCCAAATGTCCAAGCAGGGCTGAC
GGTTGATTATCGAACAGGACAGATTGCCATCAATCCCTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(113-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

62.338

82.796

0.516
  endA Streptococcus pneumoniae D39

62.338

82.796

0.516
  endA Streptococcus pneumoniae R6

62.338

82.796

0.516
  endA Streptococcus pneumoniae TIGR4

62.338

82.796

0.516

Multiple sequence alignment