Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CFN13_RS10915 Genome accession   NZ_CP022291
Coordinates   2138779..2139249 (+) Length   156 a.a.
NCBI ID   WP_000164420.1    Uniprot ID   -
Organism   Staphylococcus aureus strain EDCC5464     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2133779..2144249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFN13_RS10895 (CFN13_10890) coaW 2134088..2134891 (+) 804 WP_061389407.1 type II pantothenate kinase -
  CFN13_RS10900 (CFN13_10895) - 2135021..2135692 (-) 672 WP_000120549.1 DUF2750 domain-containing protein -
  CFN13_RS10905 (CFN13_10900) - 2136091..2137284 (-) 1194 WP_000183712.1 hypothetical protein -
  CFN13_RS10910 (CFN13_10905) - 2137284..2138468 (-) 1185 WP_001291497.1 M20 family metallopeptidase -
  CFN13_RS10915 (CFN13_10910) luxS 2138779..2139249 (+) 471 WP_000164420.1 S-ribosylhomocysteine lyase Regulator
  CFN13_RS10920 (CFN13_10915) - 2139401..2139751 (-) 351 WP_001024035.1 membrane protein -
  CFN13_RS10925 (CFN13_10920) - 2139765..2141066 (-) 1302 WP_001242303.1 pyrimidine-nucleoside phosphorylase -
  CFN13_RS10935 (CFN13_10930) deoC 2141346..2142008 (-) 663 WP_100185124.1 deoxyribose-phosphate aldolase -
  CFN13_RS10940 (CFN13_10935) deoD 2142323..2143033 (+) 711 WP_000160303.1 purine-nucleoside phosphorylase -
  CFN13_RS10945 (CFN13_10940) - 2143155..2143598 (-) 444 WP_000070865.1 Dps family protein -
  CFN13_RS10950 (CFN13_10945) - 2143798..2144211 (-) 414 WP_001123311.1 DUF393 domain-containing protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17527.83 Da        Isoelectric Point: 5.7531

>NTDB_id=200347 CFN13_RS10915 WP_000164420.1 2138779..2139249(+) (luxS) [Staphylococcus aureus strain EDCC5464]
MTKMNVESFNLDHTKVVAPFIRLAGTMEGLNGDVIHKYDIRFKQPNKEHMDMPGLHSLEHLMAENIRNHSDKVVDLSPMG
CQTGFYVSFINHDNYDDVLNIVEATLNDVLKATEVPACNEVQCGWAASHSLEGAKTIAQAFLDKRNEWHDVFGTGK

Nucleotide


Download         Length: 471 bp        

>NTDB_id=200347 CFN13_RS10915 WP_000164420.1 2138779..2139249(+) (luxS) [Staphylococcus aureus strain EDCC5464]
ATGACAAAAATGAATGTTGAAAGTTTCAATTTAGATCATACTAAAGTGGTTGCCCCATTTATTAGATTAGCGGGAACGAT
GGAAGGATTAAACGGAGATGTCATTCACAAATACGACATTCGTTTCAAACAACCAAACAAAGAACATATGGATATGCCCG
GACTACATTCATTAGAACATTTAATGGCTGAAAATATTAGAAATCATAGTGACAAAGTTGTTGATTTAAGTCCTATGGGT
TGCCAAACTGGTTTCTATGTATCATTTATTAATCATGATAATTATGATGATGTATTAAATATTGTTGAAGCAACTTTAAA
TGATGTGCTAAAAGCTACTGAAGTGCCTGCTTGTAATGAAGTACAATGTGGCTGGGCAGCAAGTCATTCATTAGAAGGTG
CTAAAACTATCGCTCAAGCATTTCTAGACAAACGAAACGAATGGCATGATGTTTTCGGTACAGGAAAATAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(5-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

45.39

90.385

0.41