Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   BI350_RS09875 Genome accession   NZ_CP017560
Coordinates   2007846..2009549 (-) Length   567 a.a.
NCBI ID   WP_075527953.1    Uniprot ID   A0A1D8JGI8
Organism   Sporosarcina ureilytica strain LMG 22257     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2002846..2014549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BI350_RS09855 (BI350_09855) - 2003109..2005148 (-) 2040 WP_075527950.1 sigma 54-interacting transcriptional regulator -
  BI350_RS09860 (BI350_09860) - 2005275..2005520 (+) 246 WP_075527951.1 DUF2627 domain-containing protein -
  BI350_RS09865 (BI350_09865) spo0A 2005647..2006435 (-) 789 WP_075527952.1 sporulation transcription factor Spo0A -
  BI350_RS09870 (BI350_09870) - 2006684..2007652 (-) 969 WP_082295035.1 SpoIVB peptidase S55 domain-containing protein -
  BI350_RS09875 (BI350_09875) recN 2007846..2009549 (-) 1704 WP_075527953.1 DNA repair protein RecN Machinery gene
  BI350_RS09880 (BI350_09880) argR 2009565..2010014 (-) 450 WP_075527954.1 transcriptional regulator ArgR -
  BI350_RS09885 (BI350_09885) - 2010121..2010942 (-) 822 WP_075527955.1 TlyA family RNA methyltransferase -
  BI350_RS09890 (BI350_09890) dxs 2010939..2012840 (-) 1902 WP_075529332.1 1-deoxy-D-xylulose-5-phosphate synthase -
  BI350_RS09895 (BI350_09895) - 2012935..2013819 (-) 885 WP_075527956.1 polyprenyl synthetase family protein -
  BI350_RS09900 (BI350_09900) xseB 2013809..2014021 (-) 213 WP_245698337.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 567 a.a.        Molecular weight: 63902.82 Da        Isoelectric Point: 5.4343

>NTDB_id=200330 BI350_RS09875 WP_075527953.1 2007846..2009549(-) (recN) [Sporosarcina ureilytica strain LMG 22257]
MLNELTIRNFAIIEHLDVSFRKGLTVLTGETGAGKSIIIDAVQLLAGGRGSQGFIRHGADKAELEGLFLIEDAKHPVLRT
LESFGIQADEGTIILRRDINANGKSVCRINGKLVTIAIMREVGASLIDIHGQHENQELMHERRHIHLLDQFAGKELEKAY
QSYSETYSNYAKLKKKLETANENEQQIAQRIDLYSFQLTEINNANLSIGEEEELEDEQRKLQNFSRLYERLNTAYEAISG
DTHALDWVGAAMSDLEDASGVDKKLSPHYEAVANSFYSLQETGYELKNVIDDLEFDPARLDAVEERLALLISLKRKYGQT
IEDILLYRDKIADELDQLINRDERLHAEQVKLDQIMKDLEVEAEELSIIRIEAAKRLEKAIMEQLQQLHMEKASFKVMIT
QKKANEFDINGYDEVAFHISTNVGEPLKPLVAVASGGELSRLMLALKTIFSKHQGVTSIIFDEVDTGVSGRVAQAIAEKI
AMVARHSQVLCISHLPQVAAMADQHYLIKKEVKNERTMTTIENVHAKERTNELSRMLSGAETTKLTLKHAEELLLLAAER
KKTLHKT

Nucleotide


Download         Length: 1704 bp        

>NTDB_id=200330 BI350_RS09875 WP_075527953.1 2007846..2009549(-) (recN) [Sporosarcina ureilytica strain LMG 22257]
ATGTTAAATGAACTTACAATAAGAAACTTTGCAATTATTGAACATTTGGATGTGTCATTCAGAAAAGGGCTTACAGTGCT
AACAGGAGAAACGGGGGCAGGAAAGTCTATTATTATAGATGCTGTTCAGCTTTTAGCAGGAGGCCGCGGATCACAAGGTT
TCATTCGCCATGGGGCGGATAAGGCGGAACTAGAAGGTCTTTTTCTGATAGAAGATGCAAAACATCCTGTGCTACGTACG
CTTGAAAGTTTCGGTATACAAGCAGATGAAGGAACCATTATATTACGACGTGATATTAATGCGAACGGAAAAAGTGTTTG
TCGTATTAACGGAAAACTCGTGACAATCGCCATCATGCGAGAAGTTGGGGCCAGCTTAATTGATATCCATGGCCAGCACG
AAAACCAAGAGTTAATGCATGAACGAAGACATATTCATTTACTTGATCAATTTGCTGGAAAAGAATTGGAGAAAGCTTAT
CAGAGTTATTCTGAAACCTATTCAAACTATGCGAAGTTAAAGAAAAAGCTTGAAACAGCAAATGAAAACGAGCAGCAAAT
TGCCCAGCGTATTGACTTATATTCTTTCCAATTGACAGAAATTAATAACGCAAATTTAAGTATCGGTGAAGAAGAAGAAC
TTGAGGATGAACAGCGTAAACTGCAAAACTTCAGCAGATTATATGAACGTTTAAACACCGCCTACGAAGCAATTAGCGGG
GACACACACGCATTAGATTGGGTCGGGGCAGCGATGAGTGATTTGGAAGATGCTTCTGGCGTCGATAAAAAATTATCGCC
ACACTATGAAGCTGTTGCCAATAGTTTCTATTCACTCCAAGAAACTGGATACGAGTTGAAAAACGTGATTGATGATTTAG
AATTTGATCCCGCAAGACTAGATGCGGTGGAAGAACGACTTGCATTGCTTATTTCATTAAAGCGAAAGTATGGTCAAACG
ATAGAGGACATTTTACTTTACCGCGATAAAATTGCAGATGAGTTGGATCAATTAATTAATCGAGATGAAAGGCTGCATGC
AGAACAAGTTAAACTTGATCAAATTATGAAAGATTTGGAAGTTGAAGCAGAAGAATTGTCAATTATTCGTATAGAAGCGG
CTAAGCGTTTAGAAAAAGCGATTATGGAACAACTTCAGCAATTACATATGGAGAAAGCATCCTTTAAAGTGATGATTACG
CAAAAAAAAGCAAATGAATTTGACATTAATGGTTATGATGAAGTGGCTTTTCATATTTCAACCAATGTGGGCGAACCTTT
AAAGCCGCTGGTAGCCGTTGCATCTGGGGGAGAATTGTCTCGTTTAATGTTGGCTTTAAAAACAATTTTCTCGAAGCATC
AAGGCGTCACTTCGATTATTTTTGATGAAGTGGATACAGGCGTTAGTGGAAGGGTAGCACAGGCAATTGCTGAAAAAATT
GCGATGGTTGCCAGACATTCCCAAGTCCTATGTATATCACATTTACCGCAAGTAGCCGCAATGGCGGACCAACATTACCT
CATTAAAAAAGAAGTGAAAAATGAACGAACAATGACAACAATCGAAAATGTTCATGCTAAAGAACGGACTAATGAACTGT
CTCGTATGCTATCTGGTGCCGAAACAACAAAATTAACATTAAAACATGCCGAAGAATTACTCTTGTTAGCTGCTGAACGC
AAAAAAACCTTACATAAAACGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1D8JGI8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

53.299

100

0.541

Multiple sequence alignment