Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   CFN13_RS06360 Genome accession   NZ_CP022291
Coordinates   1282189..1282812 (-) Length   207 a.a.
NCBI ID   WP_001208757.1    Uniprot ID   -
Organism   Staphylococcus aureus strain EDCC5464     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1277189..1287812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFN13_RS06335 (CFN13_06335) rpmG 1278766..1278915 (+) 150 WP_001265708.1 50S ribosomal protein L33 -
  CFN13_RS06340 (CFN13_06340) rpsN 1279369..1279638 (+) 270 WP_001085655.1 30S ribosomal protein S14 -
  CFN13_RS06345 (CFN13_06345) guaC 1279795..1280772 (+) 978 WP_000688123.1 GMP reductase -
  CFN13_RS06355 (CFN13_06355) - 1280794..1281810 (+) 1017 WP_169274603.1 CAP domain-containing protein -
  CFN13_RS06360 (CFN13_06360) dinR/lexA 1282189..1282812 (-) 624 WP_001208757.1 transcriptional repressor LexA Regulator
  CFN13_RS06365 (CFN13_06365) sosA 1282955..1283188 (+) 234 WP_000499647.1 DNA damage-induced cell division inhibitor SosA -
  CFN13_RS06370 (CFN13_06370) - 1283324..1283563 (+) 240 WP_000071351.1 DUF896 domain-containing protein -
  CFN13_RS06375 (CFN13_06375) recP/tkt 1283684..1285672 (+) 1989 WP_000481444.1 transketolase Machinery gene
  CFN13_RS06380 (CFN13_06380) - 1285950..1286192 (+) 243 WP_000246909.1 YneF family protein -
  CFN13_RS06385 (CFN13_06385) - 1286179..1286277 (+) 99 WP_001789897.1 hypothetical protein -
  CFN13_RS06390 (CFN13_06390) - 1286371..1286838 (+) 468 WP_000966142.1 CcdC family protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23304.52 Da        Isoelectric Point: 4.8811

>NTDB_id=200307 CFN13_RS06360 WP_001208757.1 1282189..1282812(-) (dinR/lexA) [Staphylococcus aureus strain EDCC5464]
MRELTKRQSEIYNYIKQVVQMKGYPPSVREIGEAVGLASSSTVHGHLSRLEEKGYIRRDPTKPRAIEIVSDQTSDNINME
ETIHVPVIGKVTAGVPITAVENIEEYFPLPEHLTSTHNSDIFILNVVGDSMIEAGILDGDKVIVRSQTIAENGDIIVAMT
EEDEATVKRFYKEKNRYRLQPENSTMEPIYLDNVAVIGKVIGLYREM

Nucleotide


Download         Length: 624 bp        

>NTDB_id=200307 CFN13_RS06360 WP_001208757.1 1282189..1282812(-) (dinR/lexA) [Staphylococcus aureus strain EDCC5464]
ATGAGAGAATTAACAAAACGACAAAGCGAAATATATAACTATATTAAACAAGTTGTTCAAATGAAAGGTTATCCGCCTAG
TGTTCGCGAAATTGGTGAAGCAGTTGGCTTAGCATCCAGTTCAACTGTTCATGGTCACCTTTCACGTCTTGAAGAAAAAG
GCTATATAAGAAGAGATCCGACGAAACCACGTGCTATAGAAATTGTAAGTGATCAAACAAGTGATAATATTAATATGGAA
GAAACGATTCATGTGCCAGTTATTGGTAAAGTCACAGCAGGTGTTCCTATTACCGCAGTAGAAAATATTGAAGAATATTT
TCCATTACCTGAACACTTAACATCGACACACAATAGCGACATATTCATATTAAACGTCGTAGGCGACAGTATGATTGAGG
CTGGTATATTAGACGGAGACAAAGTAATTGTTCGCAGTCAAACCATAGCAGAAAATGGAGACATTATTGTTGCTATGACC
GAGGAAGATGAAGCAACTGTCAAACGCTTCTATAAAGAAAAAAATCGTTATCGATTACAACCTGAAAATAGTACAATGGA
GCCAATTTACCTAGACAATGTTGCTGTAATTGGGAAAGTAATTGGTTTGTACCGCGAAATGTAA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(86-201)

LexA DNA binding domain (LexA_DNA_bind)

(1-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

66.341

99.034

0.657

Multiple sequence alignment