Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   CFN12_RS07635 Genome accession   NZ_CP022290
Coordinates   1515626..1517005 (-) Length   459 a.a.
NCBI ID   WP_100183650.1    Uniprot ID   -
Organism   Staphylococcus aureus strain EDCC5458     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1510626..1522005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFN12_RS07605 (CFN12_07570) - 1510659..1510775 (-) 117 WP_001789945.1 hypothetical protein -
  CFN12_RS07610 (CFN12_07575) cmk 1510806..1511465 (-) 660 WP_000644391.1 (d)CMP kinase -
  CFN12_RS07615 (CFN12_07580) - 1511542..1512510 (+) 969 WP_000681756.1 asparaginase -
  CFN12_RS07620 (CFN12_07585) ypdA 1512625..1513611 (-) 987 WP_088607938.1 bacillithiol disulfide reductase YpdA -
  CFN12_RS07625 (CFN12_07590) - 1513772..1513888 (-) 117 WP_001789943.1 hypothetical protein -
  CFN12_RS07630 (CFN12_07595) ebpS 1514013..1515473 (-) 1461 WP_000069282.1 elastin-binding protein EbpS -
  CFN12_RS07635 (CFN12_07600) recS 1515626..1517005 (-) 1380 WP_100183650.1 ATP-dependent DNA helicase RecQ Machinery gene
  CFN12_RS07640 (CFN12_07605) - 1516995..1517948 (-) 954 WP_001163801.1 helix-turn-helix domain-containing protein -
  CFN12_RS07645 (CFN12_07610) - 1518056..1518304 (+) 249 WP_054104773.1 ferredoxin -
  CFN12_RS07650 (CFN12_07615) - 1518410..1518955 (-) 546 WP_001186912.1 ECF transporter S component -
  CFN12_RS07655 (CFN12_07620) - 1519234..1519353 (-) 120 WP_001789947.1 hypothetical protein -
  CFN12_RS07660 (CFN12_07625) - 1519552..1520466 (-) 915 WP_000913219.1 DUF1672 domain-containing protein -
  CFN12_RS07665 (CFN12_07630) - 1520481..1520687 (-) 207 WP_001033757.1 hypothetical protein -
  CFN12_RS07670 (CFN12_07635) - 1520680..1521618 (-) 939 WP_000472936.1 DUF1672 domain-containing protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 52780.12 Da        Isoelectric Point: 7.0165

>NTDB_id=200223 CFN12_RS07635 WP_100183650.1 1515626..1517005(-) (recS) [Staphylococcus aureus strain EDCC5458]
MLHDILRNKFGFESFKPGQQEIIESIMSQQHTLGILPTGSGKSLCYQIPTYLSGKPTLIISPLISLMDDQVMQLKINGEK
RVTCIHSGMDEIEKKHNIKCLRHSRFIFLSPEFLLQPSNFKLISMIDFGMIVLDEAHCLSEWGYDFRPHYALIGKVTKHF
KEAVVLALTATAPPHLQDDLTEMLAIQFNVIKTTMNRPNISFKHLNFHDDEDKIEWLLPFLQQSGPTIIYVSSKKMCLNL
AQLIYDSGFLTGIYHGDMNYQERHTVQQQFLNNDIPIIVATSAFGMGINKKDIRTIIHFHLSTSPSNYIQEIGRAGRDGE
LSQAISLFQPDDKYILETLLFADMITEEDVQNFEIGEFLAPDKQAVLTTLQSFYSIGALKQIFKQSFKRKQLGFFRMIGY
CKLDQCRRKYLLEFFGEYPPAQDRCCDNDSYITDIAILNKKKVIRSIGFDEKLQNLFLR

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=200223 CFN12_RS07635 WP_100183650.1 1515626..1517005(-) (recS) [Staphylococcus aureus strain EDCC5458]
ATGTTGCATGATATTTTACGAAACAAATTTGGATTCGAGAGTTTTAAACCGGGACAACAGGAAATTATAGAAAGTATAAT
GTCTCAACAACACACTCTAGGTATACTTCCAACTGGAAGTGGAAAGAGTTTGTGTTATCAAATACCTACGTATTTATCAG
GTAAGCCGACATTAATTATCTCACCGTTAATATCTTTAATGGATGACCAAGTTATGCAGTTGAAAATAAATGGAGAAAAA
CGTGTAACATGTATTCACTCTGGTATGGATGAAATTGAGAAAAAGCATAATATTAAATGTTTACGACATAGCCGCTTCAT
CTTTCTAAGTCCAGAATTTCTCCTGCAACCGTCAAATTTTAAATTAATATCTATGATAGACTTTGGCATGATTGTTCTAG
ATGAAGCACATTGCCTATCTGAATGGGGATATGATTTCAGACCACATTATGCTCTAATAGGAAAAGTAACAAAGCATTTT
AAAGAAGCGGTTGTCTTAGCATTGACAGCAACTGCACCACCGCATTTACAAGATGATTTGACGGAAATGTTAGCGATTCA
ATTCAATGTTATTAAAACTACAATGAATCGCCCAAATATAAGCTTTAAGCATCTTAATTTTCATGATGATGAAGATAAAA
TTGAATGGTTGCTGCCGTTTCTACAACAGTCGGGACCAACGATTATTTATGTCTCATCGAAAAAGATGTGTCTGAATTTA
GCGCAACTTATTTATGATTCAGGTTTTCTTACAGGTATTTATCATGGTGATATGAATTATCAAGAGCGACACACAGTTCA
ACAACAATTTTTAAATAATGATATTCCGATTATAGTCGCAACGAGTGCTTTTGGTATGGGAATTAATAAAAAAGATATTC
GCACAATCATTCACTTTCATCTTTCAACAAGTCCTTCTAACTACATTCAAGAAATTGGCCGTGCGGGTCGCGATGGTGAA
CTAAGTCAGGCAATTAGTTTATTCCAACCGGACGATAAATATATTTTAGAAACGTTATTATTTGCAGATATGATAACAGA
AGAAGATGTACAAAATTTCGAAATAGGAGAATTTTTAGCTCCCGATAAACAAGCCGTTTTGACAACGTTGCAATCATTCT
ATAGTATCGGCGCCTTGAAACAGATATTTAAGCAATCATTTAAACGAAAGCAATTAGGATTCTTTCGCATGATTGGCTAT
TGCAAATTGGATCAATGTAGACGGAAGTATTTATTAGAATTTTTCGGTGAATATCCACCGGCACAAGATCGATGTTGTGA
CAATGATTCTTATATAACTGATATCGCAATTTTAAATAAGAAGAAGGTAATTAGAAGTATTGGATTTGATGAAAAGTTGC
AAAATTTATTTCTCAGATAG

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(17-175)

Helicase conserved C-terminal domain (Helicase_C)

(212-318)

RecQ zinc-binding (RecQ_Zn_bind)

(390-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

35.684

100

0.364