Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   SDD27957_00010 Genome accession   CM001076
Coordinates   1544..2317 (+) Length   257 a.a.
NCBI ID   EFY03821.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1..7317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDD27957_00005 htrA 209..1429 (+) 1221 EFY03820.1 endopeptidase degP Regulator
  SDD27957_00010 spo0J 1544..2317 (+) 774 EFY03821.1 chromosome partitioning protein Regulator
  SDD27957_00015 dnaA 2551..3906 (+) 1356 EFY03822.1 chromosomal replication initiation protein -
  SDD27957_00020 - 4060..5196 (+) 1137 EFY03823.1 DNA polymerase III subunit beta -
  SDD27957_00025 - 5270..5467 (+) 198 EFY03824.1 hypothetical protein -
  SDD27957_00030 - 5592..5957 (+) 366 EFY03825.1 hypothetical protein -
  SDD27957_00035 - 6089..7204 (+) 1116 EFY03826.1 GTP-dependent nucleic acid-binding protein EngD -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28964.79 Da        Isoelectric Point: 9.8968

>NTDB_id=20006 SDD27957_00010 EFY03821.1 1544..2317(+) (spo0J) [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
MTELLKSIPIEDIVANPYQPRLQFNQKELEDLANSIKTNGLIQPIIVRKSDIFGYELVAGERRFKASKMAGLTKVPAIVK
NMSSLESMQQAIVENLQRADLNPIEEAKAYQLLIEKNQMTHEEVAKYMGKSRPYISNTLRLLQLPKIISKAVEEGDISAG
HARALLTLTDEKEQLVYANRIKNEGLSVRQIEHMVTPKLKSTPIPKNKNIFITSLEDQLAQSLGLPVKIKLKSTQSGQLL
LPFANQEELNRIINKLL

Nucleotide


Download         Length: 774 bp        

>NTDB_id=20006 SDD27957_00010 EFY03821.1 1544..2317(+) (spo0J) [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
ATGACTGAACTATTGAAATCTATTCCAATTGAAGATATTGTAGCCAATCCCTATCAACCAAGGCTTCAGTTTAATCAAAA
AGAACTAGAAGATTTGGCTAATTCAATCAAGACAAATGGACTTATTCAACCTATTATTGTTCGAAAATCTGACATCTTTG
GTTATGAATTAGTTGCAGGAGAACGACGCTTTAAGGCTTCTAAAATGGCTGGGCTAACAAAAGTACCTGCTATTGTCAAA
AACATGTCCTCTTTGGAAAGTATGCAACAAGCTATCGTAGAAAATTTGCAACGTGCTGATTTGAATCCCATTGAAGAAGC
AAAAGCTTATCAGCTACTGATTGAAAAAAATCAAATGACACATGAAGAGGTTGCCAAATATATGGGAAAATCAAGACCTT
ATATTAGCAATACTTTACGCCTACTGCAACTTCCGAAAATAATTAGTAAAGCAGTAGAAGAAGGAGACATTAGTGCAGGA
CACGCGCGTGCTCTTCTCACACTAACAGACGAAAAGGAACAGTTAGTTTACGCTAATAGAATCAAAAATGAAGGGTTAAG
TGTACGACAAATTGAGCATATGGTAACTCCAAAACTTAAAAGTACTCCTATCCCAAAAAATAAAAATATTTTTATCACCT
CTTTAGAAGATCAGCTGGCCCAATCTCTAGGGTTACCAGTCAAAATCAAATTGAAATCAACTCAAAGTGGTCAATTGCTG
TTACCATTTGCTAACCAAGAGGAACTAAACAGAATTATCAACAAGCTACTTTAG

Domains

Predicted by InterproScan.

HTH domain found in ParB protein (HTH_ParB)

(148-195)

ParB/Sulfiredoxin domain (ParB_N)

(7-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

58.687

100

0.591

Multiple sequence alignment