Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   BSSX_RS02960 Genome accession   NZ_CP022287
Coordinates   570893..571534 (+) Length   213 a.a.
NCBI ID   WP_015382876.1    Uniprot ID   -
Organism   Bacillus subtilis strain SX01705     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 565893..576534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSSX_RS02930 (BSSX_0602) ydfE 567107..567730 (-) 624 WP_015482859.1 flavin reductase family protein -
  BSSX_RS02935 (BSSX_0603) ydfF 567820..568500 (+) 681 WP_015482860.1 winged helix-turn-helix domain-containing protein -
  BSSX_RS02940 (BSSX_0604) ydfG 568580..569023 (-) 444 WP_015482861.1 carboxymuconolactone decarboxylase family protein -
  BSSX_RS02945 (BSSX_0605) - 569109..569288 (-) 180 WP_080030634.1 hypothetical protein -
  BSSX_RS02950 (BSSX_0606) - 569285..569434 (-) 150 WP_015382874.1 hypothetical protein -
  BSSX_RS02955 (BSSX_0607) ydfH 569677..570900 (+) 1224 WP_015482863.1 sensor histidine kinase -
  BSSX_RS02960 (BSSX_0608) vraR 570893..571534 (+) 642 WP_015382876.1 two-component system response regulator YdfI Regulator
  BSSX_RS02965 (BSSX_0609) pleJ 571647..573818 (+) 2172 WP_015482864.1 MMPL family transporter -
  BSSX_RS02970 (BSSX_0610) cesA 574231..575133 (-) 903 WP_015482865.1 carboxylesterase -
  BSSX_RS02975 (BSSX_0611) ydfK 575336..576025 (-) 690 WP_015382879.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23946.90 Da        Isoelectric Point: 5.4183

>NTDB_id=200051 BSSX_RS02960 WP_015382876.1 570893..571534(+) (vraR) [Bacillus subtilis strain SX01705]
MNKVLIVDDHLVVREGLKLLIETNDQYTIIGEAENGKVAVRLADELEPDIILMDLYMPEMSGLEAIKQIKEKHDTPIIIL
TTYNEDHLMIEGIELGAKGYLLKDTSSETLFHTMDAAIRGNVLLQPDILKRLQEIQFERMKKQRSETQLTEKEVIVLKAI
AKGLKSKAIAFDLGVSERTVKSRLTSIYNKLGANSRTEAVTIAMQKGILTIDN

Nucleotide


Download         Length: 642 bp        

>NTDB_id=200051 BSSX_RS02960 WP_015382876.1 570893..571534(+) (vraR) [Bacillus subtilis strain SX01705]
ATGAATAAGGTTTTAATCGTTGATGACCATCTTGTCGTGAGGGAAGGTCTGAAGCTTTTAATTGAAACGAATGATCAATA
CACCATTATAGGAGAGGCGGAAAATGGAAAAGTCGCAGTCCGTCTTGCAGATGAGTTAGAACCGGATATCATTCTGATGG
ATTTGTATATGCCGGAGATGAGCGGGTTAGAGGCCATTAAACAAATAAAAGAAAAACACGATACCCCCATCATTATTTTG
ACTACATATAATGAAGATCACTTAATGATCGAAGGGATTGAATTAGGAGCGAAAGGATATCTGTTAAAGGATACGAGTTC
AGAAACCCTTTTTCACACAATGGATGCAGCTATCAGAGGTAATGTGCTGTTGCAGCCTGATATCCTCAAACGTCTTCAAG
AAATCCAATTTGAGCGGATGAAAAAGCAGCGCAGTGAGACGCAGCTGACAGAAAAGGAAGTCATTGTTCTAAAAGCAATT
GCTAAAGGTCTTAAAAGCAAAGCGATTGCCTTTGATTTGGGCGTCTCTGAGCGAACAGTAAAGTCCAGATTAACGTCCAT
TTACAATAAATTAGGCGCGAATTCAAGAACTGAGGCAGTAACGATTGCCATGCAAAAAGGTATTCTGACAATAGACAACT
AA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.264

99.531

0.371