Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   BSSX_RS00335 Genome accession   NZ_CP022287
Coordinates   59628..59858 (+) Length   76 a.a.
NCBI ID   WP_015482693.1    Uniprot ID   -
Organism   Bacillus subtilis strain SX01705     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 54628..64858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSSX_RS00305 (BSSX_0061) ridA 54791..55168 (+) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -
  BSSX_RS00310 (BSSX_0062) spoVG 55363..55656 (+) 294 WP_003218346.1 septation regulator SpoVG -
  BSSX_RS00315 (BSSX_0064) glmU 55849..57219 (+) 1371 WP_015382564.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  BSSX_RS00320 (BSSX_0065) prsS 57242..58195 (+) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  BSSX_RS00325 (BSSX_0066) rplYB 58281..58895 (+) 615 WP_003243443.1 50S ribosomal protein L25/general stress protein Ctc -
  BSSX_RS00330 (BSSX_0067) pth 59002..59568 (+) 567 WP_015382565.1 aminoacyl-tRNA hydrolase -
  BSSX_RS00335 (BSSX_0068) subA/fin 59628..59858 (+) 231 WP_015482693.1 anti-sigma-F factor Fin Machinery gene
  BSSX_RS00340 (BSSX_0069) mfd 59928..63461 (+) 3534 WP_014478601.1 transcription-repair coupling factor -
  BSSX_RS00345 (BSSX_0070) spoVT 63597..64133 (+) 537 WP_003218365.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8798.74 Da        Isoelectric Point: 5.3895

>NTDB_id=200032 BSSX_RS00335 WP_015482693.1 59628..59858(+) (subA/fin) [Bacillus subtilis strain SX01705]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHENHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=200032 BSSX_RS00335 WP_015482693.1 59628..59858(+) (subA/fin) [Bacillus subtilis strain SX01705]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGACTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAAAATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

98.684

100

0.987