Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   CFI09_RS08810 Genome accession   NZ_CP022279
Coordinates   1767385..1768812 (-) Length   475 a.a.
NCBI ID   WP_101973490.1    Uniprot ID   -
Organism   Escherichia coli strain STEC299     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1762385..1773812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFI09_RS08770 (CFI09_08770) hisL 1762969..1763019 (-) 51 WP_001364200.1 his operon leader peptide -
  CFI09_RS08780 (CFI09_08775) yefM 1763302..1763553 (+) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  CFI09_RS08785 (CFI09_08780) yoeB 1763550..1763804 (+) 255 WP_000767829.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  CFI09_RS08790 (CFI09_08785) yeeZ 1763887..1764711 (+) 825 WP_000754740.1 SDR family oxidoreductase -
  CFI09_RS08795 (CFI09_08790) yeeY 1764757..1765686 (+) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  CFI09_RS08800 yoeI 1765901..1765963 (+) 63 WP_010723108.1 membrane protein YoeI -
  CFI09_RS08805 (CFI09_08795) plaP 1765953..1767311 (+) 1359 WP_000019194.1 putrescine/proton symporter PlaP -
  CFI09_RS08810 (CFI09_08800) sbcB 1767385..1768812 (-) 1428 WP_101973490.1 exodeoxyribonuclease I Machinery gene
  CFI09_RS08820 (CFI09_08805) dacD 1769021..1770187 (+) 1167 WP_024225461.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  CFI09_RS08825 (CFI09_08810) sbmC 1770306..1770779 (+) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  CFI09_RS08830 (CFI09_08815) yeeA 1770977..1772035 (+) 1059 WP_001200890.1 FUSC family protein -
  CFI09_RS08835 (CFI09_08820) tmaR 1772206..1772535 (+) 330 WP_000450409.1 DUF496 family protein -
  CFI09_RS08840 (CFI09_08825) - 1772636..1773079 (-) 444 WP_001189438.1 EutP/PduV family microcompartment system protein -
  CFI09_RS08845 (CFI09_08830) - 1773084..1773359 (-) 276 WP_101973491.1 BMC domain-containing protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54454.79 Da        Isoelectric Point: 5.7523

>NTDB_id=199906 CFI09_RS08810 WP_101973490.1 1767385..1768812(-) (sbcB) [Escherichia coli strain STEC299]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLKHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=199906 CFI09_RS08810 WP_101973490.1 1767385..1768812(-) (sbcB) [Escherichia coli strain STEC299]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTAGCGATATTCGCGGAAGCCGAACCGTTTACACCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGAAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583