Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CFI09_RS05620 Genome accession   NZ_CP022279
Coordinates   1101464..1101979 (+) Length   171 a.a.
NCBI ID   WP_001130208.1    Uniprot ID   Q8FEP8
Organism   Escherichia coli strain STEC299     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1096464..1106979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFI09_RS05575 (CFI09_05590) csrA 1097320..1097505 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  CFI09_RS05605 (CFI09_05620) yqaB 1098694..1099260 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  CFI09_RS05610 (CFI09_05625) yqaA 1099257..1099685 (+) 429 WP_001287452.1 YqaA family protein -
  CFI09_RS05615 (CFI09_05630) gshA 1099758..1101314 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  CFI09_RS05620 (CFI09_05635) luxS 1101464..1101979 (+) 516 WP_001130208.1 S-ribosylhomocysteine lyase Regulator
  CFI09_RS05625 (CFI09_05640) emrB 1102043..1103581 (-) 1539 WP_001305258.1 multidrug efflux MFS transporter permease subunit EmrB -
  CFI09_RS05630 (CFI09_05645) emrA 1103598..1104770 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  CFI09_RS05635 (CFI09_05650) emrR 1104897..1105427 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  CFI09_RS05640 (CFI09_05655) ygaH 1105518..1105853 (-) 336 WP_000119745.1 L-valine transporter subunit YgaH -
  CFI09_RS05645 (CFI09_05660) ygaZ 1105843..1106580 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19443.21 Da        Isoelectric Point: 5.0362

>NTDB_id=199896 CFI09_RS05620 WP_001130208.1 1101464..1101979(+) (luxS) [Escherichia coli strain STEC299]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARNILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=199896 CFI09_RS05620 WP_001130208.1 1101464..1101979(+) (luxS) [Escherichia coli strain STEC299]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCAAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGCGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAACATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8FEP8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737