Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   CFI09_RS04210 Genome accession   NZ_CP022279
Coordinates   816943..818181 (-) Length   412 a.a.
NCBI ID   WP_001161826.1    Uniprot ID   -
Organism   Escherichia coli strain STEC299     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 811943..823181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFI09_RS04200 (CFI09_04210) - 812641..816093 (+) 3453 WP_000771499.1 HAD-IA family hydrolase -
  CFI09_RS04205 (CFI09_04215) - 816223..816822 (+) 600 WP_157848273.1 acyltransferase -
  CFI09_RS04210 (CFI09_04220) kpsS 816943..818181 (-) 1239 WP_001161826.1 capsular biosynthesis protein Regulator
  CFI09_RS04215 (CFI09_04225) - 818216..820243 (-) 2028 WP_033553364.1 capsular polysaccharide biosynthesis protein -
  CFI09_RS04220 (CFI09_04230) kdsB 820240..820980 (-) 741 WP_033553365.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  CFI09_RS04225 (CFI09_04235) - 820990..822666 (-) 1677 WP_001331697.1 polysaccharide biosynthesis/export family protein -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 49086.50 Da        Isoelectric Point: 9.8556

>NTDB_id=199889 CFI09_RS04210 WP_001161826.1 816943..818181(-) (kpsS) [Escherichia coli strain STEC299]
MQGNALTILLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRNRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWATSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPAPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKDSYLVIKHHPMDRGHRLYRPLIKRLSKEYGLDERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLVKTQVNAVYYGEWMFEHEIKV
DTETNVISSSHL

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=199889 CFI09_RS04210 WP_001161826.1 816943..818181(-) (kpsS) [Escherichia coli strain STEC299]
ATGCAAGGCAACGCACTAACTATTTTATTATCGGGTAAAAAATATCTGCTATTGCAGGGACCGATGGGACCTTTTTTCAA
CGACGTTGCCGAATGGTTAGAGTCATTAGGCCGTAACGCTGTGAATGTTGTATTCAACGGTGGTGATCGTTTTTACTGCC
GCAATCGACAATACCTGGCTTACTACCAAACGCCGAAAGAGTTCCCCGGTTGGTTGCGAGATCTCCACCGGCAATATGAC
TTTGATACCATCCTCTGCTTTGGTGACTGCCGCCCATTGCATAAAGAAGCAAAACGCTGGGCAACGTCGAAAGGGATCCG
CTTTCTGGCATTTGAGGAAGGATATTTACGCCCGCAATTTATTACCGTTGAAGAAGGCGGAGTAAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTGCGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGCATTGGCCATGCGATGTGGTATTACCTGATGGGCTGGCATTACCGTCATGAGTTCCCTCGCTACCGCCACCACAA
ATCATTTTCCCCCTGGTATGAAGCTCGTTGCTGGGTTCGTGCGTACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AAGTATTGCCGCGGTTAATGAATGAGCTGGATCAGCGTTATTATCTTGCCGTTTTGCAGGTGTATAACGATAGCCAGATT
CGTAACCACAGCAATTATAACGATGTGCGAGATTATATTAATGAAGTCATGTACTCATTTTCGCGTAAAGCGCCAAAAGA
CAGTTATTTGGTGATCAAACATCATCCGATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGATTGAGTAAGG
AATATGGCTTAGATGAGCGAGTCATTTATGTGCACGATCTCCCGATGCCGGAATTATTACGCCATGCAAAAGCGGTAGTG
ACGATTAACAGTACGGCGGGGATCTCTGCGCTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAAGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCGGATATGAAACTGTTTAAGAAGT
TTCGGGGGTATTTATTGGTTAAGACGCAGGTTAATGCGGTTTATTATGGGGAGTGGATGTTTGAACATGAAATTAAGGTA
GATACGGAAACCAATGTTATCTCAAGTTCGCACCTATGA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

38.987

95.874

0.374

Multiple sequence alignment