Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   DBR04_RS13935 Genome accession   NZ_CP022229
Coordinates   2490830..2491306 (-) Length   158 a.a.
NCBI ID   WP_021553055.1    Uniprot ID   -
Organism   Escherichia coli strain WCHEC96200     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2485830..2496306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBR04_RS13900 (DBR04_15430) cadC 2485913..2487451 (-) 1539 WP_001187196.1 lysine decarboxylation/transport transcriptional activator CadC -
  DBR04_RS13905 (DBR04_15420) - 2488200..2489042 (-) 843 WP_022645115.1 DUF4942 domain-containing protein -
  DBR04_RS27010 (DBR04_15415) - 2489127..2489321 (-) 195 WP_024181941.1 DUF957 domain-containing protein -
  DBR04_RS27015 (DBR04_28265) - 2489400..2489549 (-) 150 Protein_2309 DUF5983 family protein -
  DBR04_RS13920 (DBR04_15405) - 2489546..2489923 (-) 378 WP_029701676.1 TA system toxin CbtA family protein -
  DBR04_RS13925 (DBR04_15400) - 2490013..2490381 (-) 369 WP_021553056.1 type IV toxin-antitoxin system YeeU family antitoxin -
  DBR04_RS13930 (DBR04_15395) - 2490544..2490765 (-) 222 WP_000692345.1 DUF987 domain-containing protein -
  DBR04_RS13935 (DBR04_15390) radC 2490830..2491306 (-) 477 WP_021553055.1 RadC family protein Machinery gene
  DBR04_RS13940 (DBR04_15385) - 2491322..2491801 (-) 480 WP_001564060.1 antirestriction protein -
  DBR04_RS13945 (DBR04_15380) - 2492067..2492885 (-) 819 WP_001175165.1 DUF932 domain-containing protein -
  DBR04_RS13950 (DBR04_15375) - 2492975..2493208 (-) 234 WP_001278293.1 DUF905 family protein -
  DBR04_RS13955 (DBR04_15370) - 2493214..2493891 (-) 678 WP_001097302.1 hypothetical protein -
  DBR04_RS13960 (DBR04_15365) - 2494039..2494719 (-) 681 WP_029702103.1 WYL domain-containing protein -
  DBR04_RS13965 (DBR04_15360) - 2494922..2495806 (-) 885 WP_001116795.1 YfjP family GTPase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17603.23 Da        Isoelectric Point: 7.6151

>NTDB_id=199844 DBR04_RS13935 WP_021553055.1 2490830..2491306(-) (radC) [Escherichia coli strain WCHEC96200]
MQQISFLPGAMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=199844 DBR04_RS13935 WP_021553055.1 2490830..2491306(-) (radC) [Escherichia coli strain WCHEC96200]
ATGCAACAGATTTCCTTTCTGCCCGGAGCGATGACGCCCGGCGAGCGCAGTCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment