Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   DBR04_RS11145 Genome accession   NZ_CP022229
Coordinates   1882291..1882959 (-) Length   222 a.a.
NCBI ID   WP_001521609.1    Uniprot ID   -
Organism   Escherichia coli strain WCHEC96200     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1877291..1887959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBR04_RS11115 (DBR04_18375) rfaQ 1877469..1878527 (-) 1059 WP_001521608.1 lipopolysaccharide core heptosyltransferase RfaQ -
  DBR04_RS11120 (DBR04_18370) waaA 1878940..1880217 (+) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  DBR04_RS11125 (DBR04_18365) coaD 1880225..1880704 (+) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  DBR04_RS11130 (DBR04_18360) mutM 1880743..1881552 (-) 810 WP_001114542.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  DBR04_RS11135 (DBR04_18355) rpmG 1881650..1881817 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  DBR04_RS11140 (DBR04_18350) rpmB 1881838..1882074 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  DBR04_RS11145 (DBR04_18345) radC 1882291..1882959 (-) 669 WP_001521609.1 DNA repair protein RadC Machinery gene
  DBR04_RS11150 (DBR04_18340) coaBC 1883131..1884351 (+) 1221 WP_000050153.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  DBR04_RS11155 (DBR04_18335) dut 1884329..1884787 (+) 459 WP_000976070.1 dUTP diphosphatase -
  DBR04_RS11160 (DBR04_18330) slmA 1884894..1885490 (+) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  DBR04_RS11165 (DBR04_18325) pyrE 1885527..1886168 (-) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  DBR04_RS11170 (DBR04_18320) rph 1886234..1886950 (-) 717 WP_001247093.1 ribonuclease PH -
  DBR04_RS11175 (DBR04_18310) yicC 1887077..1887940 (+) 864 WP_000621336.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25304.44 Da        Isoelectric Point: 7.8777

>NTDB_id=199823 DBR04_RS11145 WP_001521609.1 1882291..1882959(-) (radC) [Escherichia coli strain WCHEC96200]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSCVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=199823 DBR04_RS11145 WP_001521609.1 1882291..1882959(-) (radC) [Escherichia coli strain WCHEC96200]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACTGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTTGTGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTAGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAATGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(9-77)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496