Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   DBR04_RS07600 Genome accession   NZ_CP022229
Coordinates   1159875..1160351 (+) Length   158 a.a.
NCBI ID   WP_001186715.1    Uniprot ID   A0ABR6U2I4
Organism   Escherichia coli strain WCHEC96200     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1154875..1165351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBR04_RS07570 (DBR04_22200) - 1155415..1156347 (-) 933 WP_023155730.1 hypothetical protein -
  DBR04_RS07575 (DBR04_22195) - 1156454..1157338 (+) 885 WP_024166630.1 GTPase -
  DBR04_RS07580 (DBR04_22190) - 1157457..1158134 (+) 678 WP_023155728.1 hypothetical protein -
  DBR04_RS07585 (DBR04_22185) - 1158164..1158373 (+) 210 WP_023155727.1 DUF905 family protein -
  DBR04_RS07590 (DBR04_22180) - 1158464..1159282 (+) 819 WP_001234693.1 DUF932 domain-containing protein -
  DBR04_RS07595 (DBR04_22175) - 1159374..1159859 (+) 486 WP_032153711.1 antirestriction protein -
  DBR04_RS07600 (DBR04_22165) radC 1159875..1160351 (+) 477 WP_001186715.1 RadC family protein Machinery gene
  DBR04_RS07605 (DBR04_22160) - 1160420..1160641 (+) 222 WP_000692345.1 DUF987 domain-containing protein -
  DBR04_RS07610 (DBR04_22155) cbeA 1160721..1161095 (+) 375 WP_032153712.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  DBR04_RS07615 (DBR04_22150) - 1161142..1161519 (+) 378 WP_000854735.1 TA system toxin CbtA family protein -
  DBR04_RS07620 (DBR04_22145) - 1161516..1162007 (+) 492 WP_023155722.1 DUF5983 family protein -
  DBR04_RS07625 (DBR04_22140) - 1162019..1162216 (+) 198 WP_000839265.1 DUF957 domain-containing protein -
  DBR04_RS07630 (DBR04_22135) - 1162301..1163167 (+) 867 WP_032153714.1 DUF4942 domain-containing protein -
  DBR04_RS07635 (DBR04_22130) - 1163239..1163502 (+) 264 WP_025492088.1 type II toxin-antitoxin system ParD family antitoxin -
  DBR04_RS07640 (DBR04_22125) - 1163499..1163825 (+) 327 WP_000779483.1 type II toxin-antitoxin system RelE/ParE family toxin -
  DBR04_RS07645 (DBR04_22120) - 1164301..1164471 (+) 171 Protein_1108 IS110 family transposase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17682.33 Da        Isoelectric Point: 6.9859

>NTDB_id=199807 DBR04_RS07600 WP_001186715.1 1159875..1160351(+) (radC) [Escherichia coli strain WCHEC96200]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVILAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=199807 DBR04_RS07600 WP_001186715.1 1159875..1160351(+) (radC) [Escherichia coli strain WCHEC96200]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTACTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACAGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAGGTAATTAAACGTGCCCTGTACCACAATGCCGCTGCCGTGATACTGGCACA
CAACCACCCGTCCGGTGAAGTCACCCCCAGTAAGGCAGATCGCCTTATCACGGAACGCCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTACCGGACCATCTGATAGTTGGTGGCAACCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment