Detailed information NTG0199803

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: DBR04_RS06205
• Genome accession: NZ_CP022229
• Coordinates: 882666..883658 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain WCHEC96200
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 877666..888658

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DBR04_RS06180 (DBR04_23625)	ygbN	878321..879685 (+)	1365	WP_000104455.1	GntP family transporter	-
DBR04_RS06185 (DBR04_23620)	-	879724..879960 (-)	237	WP_000562982.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
DBR04_RS06190 (DBR04_23615)	-	879971..881398 (-)	1428	WP_000863205.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
DBR04_RS06195 (DBR04_23610)	-	881398..881991 (-)	594	WP_001521150.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
DBR04_RS06200 (DBR04_23605)	-	882138..882545 (+)	408	WP_001521151.1	MarR family transcriptional regulator	-
DBR04_RS06205 (DBR04_23600)	rpoS	882666..883658 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
DBR04_RS06210 (DBR04_23595)	nlpD	883721..884815 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
DBR04_RS06215 (DBR04_23590)	pcm	885000..885626 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
DBR04_RS06220 (DBR04_23585)	surE	885620..886381 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
DBR04_RS06225 (DBR04_23580)	truD	886362..887411 (-)	1050	WP_000568924.1	tRNA pseudouridine(13) synthase TruD	-
DBR04_RS06230 (DBR04_23575)	ispF	887408..887887 (-)	480	WP_001521152.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
DBR04_RS06235 (DBR04_23570)	ispD	887887..888597 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=199803 DBR04_RS06205 WP_000081550.1 882666..883658(-) (rpoS) [Escherichia coli strain WCHEC96200]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=199803 DBR04_RS06205 WP_000081550.1 882666..883658(-) (rpoS) [Escherichia coli strain WCHEC96200]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCCCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715