Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   DBR04_RS05895 Genome accession   NZ_CP022229
Coordinates   826383..826898 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain WCHEC96200     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 821383..831898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBR04_RS05870 (DBR04_23930) ygaZ 821782..822519 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  DBR04_RS05875 (DBR04_23925) ygaH 822509..822844 (+) 336 WP_000119745.1 L-valine transporter subunit YgaH -
  DBR04_RS05880 (DBR04_23920) emrR 822935..823465 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  DBR04_RS05885 (DBR04_23915) emrA 823592..824764 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  DBR04_RS05890 (DBR04_23910) emrB 824781..826319 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  DBR04_RS05895 (DBR04_23905) luxS 826383..826898 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  DBR04_RS05900 (DBR04_23900) gshA 827048..828604 (-) 1557 WP_001521120.1 glutamate--cysteine ligase -
  DBR04_RS05905 (DBR04_23895) yqaA 828677..829105 (-) 429 WP_001287454.1 YqaA family protein -
  DBR04_RS05910 (DBR04_23890) yqaB 829102..829668 (-) 567 WP_001521122.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  DBR04_RS05940 (DBR04_23860) csrA 830960..831145 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=199800 DBR04_RS05895 WP_001130211.1 826383..826898(-) (luxS) [Escherichia coli strain WCHEC96200]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=199800 DBR04_RS05895 WP_001130211.1 826383..826898(-) (luxS) [Escherichia coli strain WCHEC96200]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCACAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment