Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   DBR04_RS02180 Genome accession   NZ_CP022229
Coordinates   41614..43041 (+) Length   475 a.a.
NCBI ID   WP_021523141.1    Uniprot ID   -
Organism   Escherichia coli strain WCHEC96200     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 36614..48041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBR04_RS02140 (DBR04_27840) yeeW 36798..36992 (+) 195 WP_000988600.1 DUF5983 family protein -
  DBR04_RS02145 (DBR04_27835) - 37038..37118 (+) 81 Protein_41 hypothetical protein -
  DBR04_RS02150 (DBR04_27830) - 37407..37553 (-) 147 Protein_42 transposase domain-containing protein -
  DBR04_RS02155 (DBR04_27825) - 37607..37789 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  DBR04_RS02160 (DBR04_27820) tmaR 37890..38219 (-) 330 WP_000450409.1 DUF496 family protein -
  DBR04_RS02165 (DBR04_27815) yeeA 38391..39449 (-) 1059 WP_001200890.1 FUSC family protein -
  DBR04_RS02170 (DBR04_27810) sbmC 39647..40120 (-) 474 WP_001105416.1 DNA gyrase inhibitor SbmC -
  DBR04_RS02175 (DBR04_27805) dacD 40239..41405 (-) 1167 WP_021523140.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  DBR04_RS02180 (DBR04_27800) sbcB 41614..43041 (+) 1428 WP_021523141.1 exodeoxyribonuclease I Machinery gene
  DBR04_RS02185 (DBR04_27795) tsuB 43084..43311 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  DBR04_RS02190 (DBR04_27790) tsuA 43325..44383 (-) 1059 WP_000492324.1 thiosulfate utilization transporter TsuA/YeeE -
  DBR04_RS02195 (DBR04_27785) plaP 44562..45920 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  DBR04_RS02200 (DBR04_27780) yoeI 45910..45972 (-) 63 WP_010723108.1 membrane protein YoeI -
  DBR04_RS02205 (DBR04_27775) yeeY 46187..47116 (-) 930 WP_023154044.1 LysR substrate-binding domain-containing protein -
  DBR04_RS02210 (DBR04_27770) yeeZ 47162..47986 (-) 825 WP_000754758.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54513.81 Da        Isoelectric Point: 5.4700

>NTDB_id=199790 DBR04_RS02180 WP_021523141.1 41614..43041(+) (sbcB) [Escherichia coli strain WCHEC96200]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNVVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=199790 DBR04_RS02180 WP_021523141.1 41614..43041(+) (sbcB) [Escherichia coli strain WCHEC96200]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTAATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCACGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGT
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGTCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTTGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581

Multiple sequence alignment