Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CE141_RS09755 Genome accession   NZ_CP022164
Coordinates   1940865..1941341 (-) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli strain M160133     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1935865..1946341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CE141_RS09710 (CE141_09705) sbmC 1936358..1936831 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  CE141_RS09715 (CE141_09710) yeeA 1937029..1938087 (+) 1059 WP_001200905.1 FUSC family protein -
  CE141_RS09720 (CE141_09715) tmaR 1938259..1938588 (+) 330 WP_000450409.1 DUF496 family protein -
  CE141_RS29100 (CE141_09720) - 1938689..1938871 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  CE141_RS29200 (CE141_09725) - 1938934..1939071 (+) 138 Protein_1815 transposase domain-containing protein -
  CE141_RS28810 - 1939360..1939452 (-) 93 Protein_1816 hypothetical protein -
  CE141_RS09735 (CE141_09730) yeeW 1939486..1939680 (-) 195 WP_000988599.1 DUF5983 family protein -
  CE141_RS09740 (CE141_09735) cbtA 1939677..1940050 (-) 374 Protein_1818 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  CE141_RS09745 (CE141_09740) cbeA 1940139..1940507 (-) 369 WP_001285585.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  CE141_RS09750 (CE141_09745) yeeT 1940581..1940802 (-) 222 WP_000692323.1 DUF987 domain-containing protein -
  CE141_RS09755 (CE141_09750) radC 1940865..1941341 (-) 477 WP_001186773.1 RadC family protein Machinery gene
  CE141_RS09760 (CE141_09755) - 1941357..1941836 (-) 480 WP_000860076.1 antirestriction protein -
  CE141_RS09765 (CE141_09760) - 1941918..1942739 (-) 822 WP_001234530.1 DUF932 domain-containing protein -
  CE141_RS09775 (CE141_09770) - 1942960..1943370 (-) 411 WP_000846713.1 hypothetical protein -
  CE141_RS09780 (CE141_09775) - 1943386..1944069 (-) 684 WP_000775500.1 hypothetical protein -
  CE141_RS09785 (CE141_09780) - 1944205..1945275 (-) 1071 WP_000102664.1 patatin-like phospholipase family protein -
  CE141_RS09790 (CE141_09785) - 1945272..1946177 (-) 906 WP_000203545.1 diguanylate cyclase regulator RdcB family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=199642 CE141_RS09755 WP_001186773.1 1940865..1941341(-) (radC) [Escherichia coli strain M160133]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=199642 CE141_RS09755 WP_001186773.1 1940865..1941341(-) (radC) [Escherichia coli strain M160133]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAACTGATTGCCGGTGAAACCCTCTTTACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCCTCCGGTGAAGTCACACCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392